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BaseInfo

ncRNA ID novel_ath_miR972
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:10916488-10916619 [+]
Reference genome TAIR10
Source SRR1265998
Length 22
Mature sequence(if miRNA) 1 - UUAAAGAUUUACAAGGGAUUUU - 22
Stem-loop(if miRNA) --      -         G           -    GA    A         -A        --   CUU
  UUAAAG AUUUACAAG GAUUUUAAAAG GUUU  AAAA AUUUACAAG  GUUUUUAA  AGU   C
  |||||| ||||||||| ||||||||||| ||||  |||| |||||||||  ||||||||  |||
  AAUUUU UAGAUGUUC CUAAAAUUUUC CAAA  UUUU UAAAUGUUC  UAAAAGUU  UCA   U
AA      A         A           A    -A    A         CC        CC   AAA
Stem-loop sequence UUAAAGAUUUACAAGGGAUUUUAAAAGGUUUGAAAAAAAUUUACAAGAGUUUUUAAAGUCUUCUAAAACUCCUUGAAAAUCCCUUGUAAAUAUUUUAAAACACUUUUAAAAUCACUUGUAGAUAUUUUAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BX831843.1
ncRNA:22   UUUUAGGGAACAUUUAGAAAUU   1
  *|*|||=|||*|||||||||||
targets:1630   CACAUCUCUUAUAAAUCUUUAA   1651

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH33ZB04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget