ncRNA ID | novel_ath_miR972 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr5:10916488-10916619 [+] |
Reference genome | TAIR10 |
Source | SRR1265998 |
Length | 22 |
Mature sequence(if miRNA) | 1 - UUAAAGAUUUACAAGGGAUUUU - 22 |
Stem-loop(if miRNA) |
--      -         G           -    GA    A         -A        --   CUU   UUAAAG AUUUACAAG GAUUUUAAAAG GUUU  AAAA AUUUACAAG  GUUUUUAA  AGU   C   |||||| ||||||||| ||||||||||| ||||  |||| |||||||||  ||||||||  |||   AAUUUU UAGAUGUUC CUAAAAUUUUC CAAA  UUUU UAAAUGUUC  UAAAAGUU  UCA   U AA      A         A           A    -A    A         CC        CC   AAA |
Stem-loop sequence | UUAAAGAUUUACAAGGGAUUUUAAAAGGUUUGAAAAAAAUUUACAAGAGUUUUUAAAGUCUUCUAAAACUCCUUGAAAAUCCCUUGUAAAUAUUUUAAAACACUUUUAAAAUCACUUGUAGAUAUUUUAAAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BX831843.1 |
|
2.5 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH33ZB04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget |