Search result

BaseInfo

ncRNA ID	novel_ath_miR971
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:12211789-12211863 [+]
Reference genome	TAIR10
Source	ERR1297317
Length	24
Mature sequence(if miRNA)	52 - AAUGAAGAAGACUCUAAAGCUGGC - 75
Stem-loop(if miRNA)	--A    --            UC    UU UG     G G    AGCU  GGAGUCUUCUUU  UUCC  G  CUCGA U U    ||||  ||||||||||||  ||||  |  ||||| |    UCGA  UCUCAGAAGAAG  AAGG  C  GAGUU A C CGG    AA            -U    -- GU     G U
Stem-loop sequence	AAGCUGGAGUCUUCUUUUCUUCCUUGUGCUCGAGUGUCUAGUUGAGUGCGGAAUGAAGAAGACUCUAAAGCUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:24   CGGUCGAAAUCUCAGAAGAAGUAA   1   ||||||||*||||||||||*|||| targets:397   GCCAGCUUCAGAGUCUUCUCCAUU   420 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:24   CGGUCGAAAUCUCAGAAGAAGUAA   1   ||=|||||*||||||||||*|||| targets:1137   GCUAGCUUCAGAGUCUUCUCCAUU   1160 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:24   CGGUCGAAAUCUCAGAAGAAGUAA   1   ||=|||||*||||||||||*|||| targets:1089   GCUAGCUUCAGAGUCUUCUCCAUU   1112 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:24   CGGUCGAAAUCUCAGAAGAAGUAA   1   ||=|||||*||||||||||*|||| targets:762   GCUAGCUUCAGAGUCUUCUCCAUU   785 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:24   CGGUCGAAAUCUCAGAAGAAGUAA   1   *|*|||||*||||*|||||||||| targets:1791   ACAAGCUUCAGAGCCUUCUUCAUU   1814 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:24   CGGUCGAAAUCUCAGAAGAAGUAA   1   *|*|||||*||||*|||||||||| targets:982   ACAAGCUUCAGAGCCUUCUUCAUU   1005 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183194.1	ncRNA:24   CGGUCGAAAUCUCAGAAGAAGUAA   1   *|*|||||*||||*|||||||||| targets:631   ACAAGCUUCAGAGCCUUCUUCAUU   654 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget