ncRNA ID | novel_ath_miR961 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr2:18994648-18994844 [+] |
Reference genome | TAIR10 |
Source | SRR1262546 |
Length | 18 |
Mature sequence(if miRNA) | 180 - UUUGGAUUGAAGGGAGCU - 197 |
Stem-loop(if miRNA) |
--        -C      A         ---CAA   ---UU      CUAAAAU C            U  A   CU     A     A    GCGGUG    A   CUCCCUUC  UCCAAA CGAAGAGGA      GAU     GAGGAA       G AGAAUCUAAGAG UC UGU  UCCUC UAGAG GUGC      UUAA A   ||||||||  |||||| |||||||||      |||     ||||||       | |||||||||||| || |||  ||||| ||||| ||||      ||||   GAGGGAAG  AGGUUU GCUUCUCUU      CUA     CUCUUU       C UCUUAGAUUCUC AG ACG  AGGGG AUUUC CACG      AGUU G UC        UU      -         CUCUUA   UACAU      ---CUCC -            C  C   UU     A     A    -AAAGA    C |
Stem-loop sequence | CUCCCUUCCUCCAAAACGAAGAGGACAAGAUUUGAGGAACUAAAAUGCAGAAUCUAAGAGUUCAUGUCUUCCUCAUAGAGAGUGCGCGGUGUUAAAAGCUUGAAGAAAGCACACUUUAAGGGGAUUGCACGACCUCUUAGAUUCUCCCUCUUUCUCUACAUAUCAUUCUCUUCUCUUCGUUUGGAUUGAAGGGAGCU |