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BaseInfo

ncRNA ID novel_ath_miR961
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:18994648-18994844 [+]
Reference genome TAIR10
Source SRR1262546
Length 18
Mature sequence(if miRNA) 180 - UUUGGAUUGAAGGGAGCU - 197
Stem-loop(if miRNA) --        -C      A         ---CAA   ---UU      CUAAAAU C            U  A   CU     A     A    GCGGUG    A
  CUCCCUUC  UCCAAA CGAAGAGGA      GAU     GAGGAA       G AGAAUCUAAGAG UC UGU  UCCUC UAGAG GUGC      UUAA A
  ||||||||  |||||| |||||||||      |||     ||||||       | |||||||||||| || |||  ||||| ||||| ||||      ||||
  GAGGGAAG  AGGUUU GCUUCUCUU      CUA     CUCUUU       C UCUUAGAUUCUC AG ACG  AGGGG AUUUC CACG      AGUU G
UC        UU      -         CUCUUA   UACAU      ---CUCC -            C  C   UU     A     A    -AAAGA    C
Stem-loop sequence CUCCCUUCCUCCAAAACGAAGAGGACAAGAUUUGAGGAACUAAAAUGCAGAAUCUAAGAGUUCAUGUCUUCCUCAUAGAGAGUGCGCGGUGUUAAAAGCUUGAAGAAAGCACACUUUAAGGGGAUUGCACGACCUCUUAGAUUCUCCCUCUUUCUCUACAUAUCAUUCUCUUCUCUUCGUUUGGAUUGAAGGGAGCU