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BaseInfo

ncRNA ID	novel_ath_miR938
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr4:16373430-16373564 [-]
Reference genome	TAIR10
Source	SRR1262389
Length	23
Mature sequence(if miRNA)	113 - AGAAUAGUAGAAGAAGAAGAAAG - 135
Stem-loop(if miRNA)	--    UA    AA     -      GG     C   UGAUA   ACGUAGAAGGAAGAUGGCCUUAUCUC   AGAA  GUAG  GAAGA AGAAAG  AGAGU UUG     UCU                          A   ||||  ||||  ||||| ||||||  ||||| |||     |||   UCUU  CAUC  CUUCU UCUUUC  UCUCA GAC     CCU                          A CU    CC    -G     C      UU     U   -----   UCUCUUUUCCGCUCUCUGCGUCUGUG
Stem-loop sequence	AGAAUAGUAGAAGAAGAAGAAAGGGAGAGUCUUGUGAUAUCUACGUAGAAGGAAGAUGGCCUUAUCUCAAGUGUCUGCGUCUCUCGCCUUUUCUCUUCCCAGUACUCUUUCUUUCUCUCUUCGCUACCCUUCUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_117445.3	ncRNA:23   GAA--AGAAGAAGAAGAUGAUAAGA   1   |||--|||||||||||||||*|||| targets:22   CUUCUUCUUCUUCUUCUACUUUUCU   46 Target Full Sequence	1.5	Arabidopsis thaliana Pectin lyase-like superfamily protein mRNA	Pectin lyase-like superfamily protein(AT4G13710)	coding protein	psRNATarget
NM_001203791.1	ncRNA:23   GAA--AGAAGAAGAAGAUGAUAAGA   1   |||--|||||||||||||||*|||| targets:20   CUUCUUCUUCUUCUUCUACUUUUCU   44 Target Full Sequence	1.5	Arabidopsis thaliana Pectin lyase-like superfamily protein mRNA	Pectin lyase-like superfamily protein(AT4G13710)	coding protein	psRNATarget
AF424592.1	ncRNA:23   GAA--AGAAGAAGAAGAUGAUAAGA   1   |||--|||||||||||||||*|||| targets:20   CUUCUUCUUCUUCUUCUACUUUUCU   44 Target Full Sequence	1.5	Arabidopsis thaliana AT4g13710/F18A5_100 mRNA, complete cds	NA	coding protein	psRNATarget
BX828313.1	ncRNA:23   GAAAGAAGAAGAAGAUGAUAAGA   1   **|||||||||||||*||||||| targets:445   GCUUCUUCUUCUUCUUCUAUUCU   467 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH75ZH01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget