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BaseInfo

ncRNA ID novel_ath_miR930
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:22322721-22322896 [-]
Reference genome TAIR10
Source DRR014210
Length 24
Mature sequence(if miRNA) 153 - UUGAUGAUUCGACAAAGUGAAGGG - 176
Stem-loop(if miRNA) --   A                                           G                   C   A        C  UUU
  UUG UGAUUCGACAAAGUGAAGGGUUUGGUCUUCAGAAAGUUUUCUU CAAGGUUCAAGAACGGAUC UCA AAUUCAAA UG   C
  ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| ||
  AAC ACUGAGCUGUUUCACUUCCCAAACCAGAGGUCUUUCAAAAGAA GUUCCAAGUUCUUGCCUAG AGU UUAAGUUU AC   U
GG   C                                           G                   A   G        A  CAC
Stem-loop sequence UUGAUGAUUCGACAAAGUGAAGGGUUUGGUCUUCAGAAAGUUUUCUUGCAAGGUUCAAGAACGGAUCCUCAAAAUUCAAACUGUUUCUCACCAAUUUGAAUUGUGAAGAUCCGUUCUUGAACCUUGGAAGAAAACUUUCUGGAGACCAAACCCUUCACUUUGUCGAGUCACCAAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK229033.1
ncRNA:24   GGGAAGUGAAACAGCUUAGUAGUU   1
  ===|||||||*|||*|||||||||
targets:1168   UUUUUCACUUGGUCAAAUCAUCAA   1191

2.5 Arabidopsis thaliana mRNA for putative reverse transcriptase, complete cds, clone: RAFL16-33-I07 NA coding protein psRNATarget