Search result

BaseInfo

ncRNA ID ath-miRf10528-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 25
Mature sequence(if miRNA) NA - AGGUGAAGACACUCGACCUCGGGGU - NA
Stem-loop(if miRNA)                       AUG G   -GA  GAAG      -AGA           C G U
CACUCGACCUCGGGGUCGAGUG   U AUC   GU    GACAGG    UACUCGACUUC U G U
||||||||||||||||||||||   | |||   ||    ||||||    ||||||||||| | | G
GUGAGCUGGGGCUCCAGCUCAC   A UGG   UA    CUGUCU    AUGAGCUGGAG A U A
                      AGA G   AAG  ---A      GGUG           U G G
Stem-loop sequence CACUCGACCUCGGGGUCGAGUGAUGUGAUCGAGUGAAGGACAGGAGAUACUCGACUUCCUGGUUGAGUGAUGAGGUCGAGUAGUGGUCUGUCAAUGAAGGUGAAGACACUCGACCUCGGGGUCGAGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183194.1
ncRNA:25   UGGGGCUCCAGCUCACAGAAGUGGA   1
  |||*=||||||||||||||||||||
targets:523   ACCAUGAGGUCGAGUGUCUUCACCU   547

0.0 Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence NA coding protein psRNATarget
EF183042.1
ncRNA:25   UGGGGCUCCAGCUCACAGAAGUGGA   1
  |||=|||||*|||||||||||||||
targets:1682   ACCUCGAGGCCGAGUGUCUUCACCU   1706

1.0 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:25   UGGGGCUCCAGCUCACAGAAGUGGA   1
  ||||||*||||||||||||||||||
targets:1216   ACCCCGUGGUCGAGUGUCUUCACCU   1240

1.0 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
EF183042.1
ncRNA:25   UGGGGCUCCAGCUCACAGAAGUGGA   1
  ||||||||||||||||||||||=|*
targets:1624   ACCCCGAGGUCGAGUGUCUUCAUCC   1648

2.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget