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BaseInfo

ncRNA ID	novel_ath_miR882
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:13506171-13506229 [-]
Reference genome	TAIR10
Source	SRR1163720
Length	24
Mature sequence(if miRNA)	1 - UAUAUAUGAGUUUGUUUGUAGAUU - 24
Stem-loop(if miRNA)	--       UUGU            UCGU   UCUACAA    AUUUAUAUGUAA    U   |||||||    ||||||||||||    G   AGAUGUU    UGAGUAUAUAUU    C UU       UGUU            UAAA
Stem-loop sequence	UCUACAAUUGUAUUUAUAUGUAAUCGUUGCAAAUUUAUAUAUGAGUUUGUUUGUAGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY087114.1	ncRNA:24   UUAGAUGUUUGUUUGAGUAUAUAU   1   ||*|*||||||||||*|||||||| targets:11   AAGCAACAAACAAACACAUAUAUA   34 Target Full Sequence	1.5	Arabidopsis thaliana clone 31878 mRNA, complete sequence	NA	coding protein	psRNATarget
NM_129465.5	ncRNA:24   UUAGAUGUUUGUUUGAGUAUAUAU   1   ****|||||||||||||||=|||* targets:1275   UUGGUACAAACAAACUCAUGUAUC   1298 Target Full Sequence	2.5	Arabidopsis thaliana NAD(P)-binding Rossmann-fold superfamily protein (EMB2799), mRNA	NAD(P)-binding Rossmann-fold superfamily protein(EMB2799)	coding protein	psRNATarget
AY065091.1	ncRNA:24   UUAGAUGUUUGUUUGAGUAUAUAU   1   ****|||||||||||||||=|||* targets:1162   UUGGUACAAACAAACUCAUGUAUC   1185 Target Full Sequence	2.5	Arabidopsis thaliana unknown protein (At2g39070:At2g39080; T7F6.24:T7F6.25) mRNA, complete cds	NA	coding protein	psRNATarget
AK176409.1	ncRNA:24   UUAGAUGUUUGUUUGAGUAUAUAU   1   ****|||||||||||||||=|||* targets:1162   UUGGUACAAACAAACUCAUGUAUC   1185 Target Full Sequence	2.5	Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-13-K22	NA	coding protein	psRNATarget
BX842479.1	ncRNA:24   UUAGAUGUUUGUUUGAGUAUAUAU   1   ****|||||||||||||||=|||* targets:1162   UUGGUACAAACAAACUCAUGUAUC   1185 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH63ZC12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX842484.1	ncRNA:24   UUAGAUGUUUGUUUGAGUAUAUAU   1   ****|||||||||||||||=|||* targets:1069   UUGGUACAAACAAACUCAUGUAUC   1092 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH55ZA04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK175842.1	ncRNA:24   UUAGAUGUUUGUUUGAGUAUAUAU   1   ****|||||||||||||||=|||* targets:851   UUGGUACAAACAAACUCAUGUAUC   874 Target Full Sequence	2.5	Arabidopsis thaliana mRNA, partial cds, clone: RAFL22-45-J20	NA	coding protein	psRNATarget
NM_001333995.1	ncRNA:24   UUAGAUGU---UUGUUUGAGUAUAUAU   1   *|||-|||---|||||||||||||||| targets:99   UAUC-ACAUACAACAAACUCAUAUAUA   124 Target Full Sequence	3.0	Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-binding superfamily protein mRNA	basic helix-loop-helix (bHLH) DNA-binding superfamily protein(AT1G61660)	coding protein	psRNATarget
NM_001333996.1	ncRNA:24   UUAGAUGU---UUGUUUGAGUAUAUAU   1   *|||-|||---|||||||||||||||| targets:99   UAUC-ACAUACAACAAACUCAUAUAUA   124 Target Full Sequence	3.0	Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-binding superfamily protein mRNA	basic helix-loop-helix (bHLH) DNA-binding superfamily protein(AT1G61660)	coding protein	psRNATarget
NM_001333997.1	ncRNA:24   UUAGAUGU---UUGUUUGAGUAUAUAU   1   *|||-|||---|||||||||||||||| targets:120   UAUC-ACAUACAACAAACUCAUAUAUA   145 Target Full Sequence	3.0	Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-binding superfamily protein mRNA	basic helix-loop-helix (bHLH) DNA-binding superfamily protein(AT1G61660)	coding protein	psRNATarget
NM_104847.4	ncRNA:24   UUAGAUGU---UUGUUUGAGUAUAUAU   1   *|||-|||---|||||||||||||||| targets:104   UAUC-ACAUACAACAAACUCAUAUAUA   129 Target Full Sequence	3.0	Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-binding superfamily protein mRNA	basic helix-loop-helix (bHLH) DNA-binding superfamily protein(AT1G61660)	coding protein	psRNATarget
NM_179505.1	ncRNA:24   UUAGAUGU---UUGUUUGAGUAUAUAU   1   *|||-|||---|||||||||||||||| targets:28   UAUC-ACAUACAACAAACUCAUAUAUA   53 Target Full Sequence	3.0	Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-binding superfamily protein mRNA	basic helix-loop-helix (bHLH) DNA-binding superfamily protein(AT1G61660)	coding protein	psRNATarget
NM_001198355.1	ncRNA:24   UUAGAUGU---UUGUUUGAGUAUAUAU   1   *|||-|||---|||||||||||||||| targets:33   UAUC-ACAUACAACAAACUCAUAUAUA   58 Target Full Sequence	3.0	Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-binding superfamily protein mRNA	basic helix-loop-helix (bHLH) DNA-binding superfamily protein(AT1G61660)	coding protein	psRNATarget
NM_001198356.1	ncRNA:24   UUAGAUGU---UUGUUUGAGUAUAUAU   1   *|||-|||---|||||||||||||||| targets:33   UAUC-ACAUACAACAAACUCAUAUAUA   58 Target Full Sequence	3.0	Arabidopsis thaliana basic helix-loop-helix (bHLH) DNA-binding superfamily protein mRNA	basic helix-loop-helix (bHLH) DNA-binding superfamily protein(AT1G61660)	coding protein	psRNATarget
AF380649.1	ncRNA:24   UUAGAUGU---UUGUUUGAGUAUAUAU   1   *|||-|||---|||||||||||||||| targets:15   UAUC-ACAUACAACAAACUCAUAUAUA   40 Target Full Sequence	3.0	Arabidopsis thaliana At1g61660/T13M11_21 mRNA, complete cds	NA	coding protein	psRNATarget