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BaseInfo

ncRNA ID novel_ath_miR879
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:11304567-11304660 [+]
Reference genome TAIR10
Source SRR1163720
Length 24
Mature sequence(if miRNA) 71 - UGGAGAUAAUGGAGCAUUCUAGAG - 94
Stem-loop(if miRNA) --       UUA  UG           GUCUUUUCUAC    UUU  G  U
  UUAGAGU   UU  UUAUUUCUAAA           UCCU   CA GU A
  |||||||   ||  |||||||||||           ||||   || ||
  GAUCUUA   AG  AAUAGAGGUUU           AGGG   GU CA U
GA       -CG  GU           -------ACUU    UUU  A  U
Stem-loop sequence UUAGAGUUUAUUUGUUAUUUCUAAAGUCUUUUCUACUCCUUUUCAGGUUAUUACAUGUUUGGGAUUCAUUUGGAGAUAAUGGAGCAUUCUAGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK230088.1
ncRNA:24   GAGAUCUUACGAGGUAAUAGAGGU   1
  |||*|||||||||=||||||||||
targets:1358   CUCCAGAAUGCUCUAUUAUCUCCA   1381

1.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-73-D14 NA coding protein psRNATarget