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BaseInfo

ncRNA ID	novel_ath_miR859
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr2:8038669-8038838 [-]
Reference genome	TAIR10
Source	SRR1163718
Length	21
Mature sequence(if miRNA)	150 - UUAUUGGUUGUCUCUUAGAUU - 170
Stem-loop(if miRNA)	--           C C                   --------  GAACAUCUCAUUUUAACUCUUAUAUAAGAGACGAAAUGAUAACA   UUAUUGGUUGU U UUAGAUUAGUUCUUAGGAU        AA                                            U   ||||||||||| | |||||||||||||||||||        ||   AAUAACCAACA A AAUCUAAUCAAGAAUUCUA        CA                                            G GU           A A                   AAAAAAAA  GUAACUAAUGAUUUUUGUAGAGUAAAAUUGAGAAUAUAUUCUCU
Stem-loop sequence	UUAUUGGUUGUCUCUUAGAUUAGUUCUUAGGAUAAGAACAUCUCAUUUUAACUCUUAUAUAAGAGACGAAAUGAUAACAUGUCUCUUAUAUAAGAGUUAAAAUGAGAUGUUUUUAGUAAUCAAUGACAAAAAAAAAUCUUAAGAACUAAUCUAAAAAACAACCAAUAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY078971.1	ncRNA:21   UUAGAUUCUCUGUUGGUUAUU   1   |=|*||||||||||||||*|| targets:55   AGUGUAAGAGACAACCAACAA   75 Target Full Sequence	2.5	Arabidopsis thaliana AT5g13630/MSH12_9 mRNA, complete cds	NA	coding protein	psRNATarget
Z68495.1	ncRNA:21   UUAGAUUCUCUGUUGGUUAUU   1   |=|*||||||||||||||*|| targets:47   AGUGUAAGAGACAACCAACAA   67 Target Full Sequence	2.5	A.thaliana CHLH gene	NA	coding protein	psRNATarget
NM_001085109.1	ncRNA:21   UUAGAUUCUCUGUUGGUUAUU   1   |=|*||||||||||||||*|| targets:55   AGUGUAAGAGACAACCAACAA   75 Target Full Sequence	2.5	Arabidopsis thaliana magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (GUN5), mRNA	magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)(GUN5)	coding protein	psRNATarget
NM_121366.4	ncRNA:21   UUAGAUUCUCUGUUGGUUAUU   1   |=|*||||||||||||||*|| targets:257   AGUGUAAGAGACAACCAACAA   277 Target Full Sequence	2.5	Arabidopsis thaliana magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (GUN5), mRNA	magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)(GUN5)	coding protein	psRNATarget