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BaseInfo

ncRNA ID	novel_ath_miR853
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:8958638-8958691 [+]
Reference genome	TAIR10
Source	SRR1163504
Length	21
Mature sequence(if miRNA)	1 - UAUGGAUGUAUGGAUGUAUGC - 21
Stem-loop(if miRNA)	--   GG       G  G        A   UAU  AUGUAUG AU UAUGCAUG A   |||  ||||||| || ||||||||   GUA  UACGUAU UA GUAUGUAC U AC   AG       G  G        G
Stem-loop sequence	UAUGGAUGUAUGGAUGUAUGCAUGAAUGCAUGUAUGGAUGUAUGCAUGAAUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001344266.1	ncRNA:21   CGUAUGUAGGUAUGUAGGUAU   1   ||||||||=|||||||||||| targets:713   GCAUACAUUCAUACAUCCAUA   733 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT5G38747)	coding protein	psRNATarget
NM_001344266.1	ncRNA:21   CGUAUGUAGGUAUGUAGGUAU   1   *|||||||=|||||||||||| targets:765   UCAUACAUUCAUACAUCCAUA   785 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT5G38747)	coding protein	psRNATarget
NM_001343946.1	ncRNA:21   CGUAUGUAGGUAUGUAGGUAU   1   ||||||||||||||||*|||* targets:843   GCAUACAUCCAUACAUGCAUU   863 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343946.1	ncRNA:21   CGUAUGUAGGUAUGUAGGUAU   1   ||||||||||||||||*|||* targets:867   GCAUACAUCCAUACAUGCAUU   887 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343946.1	ncRNA:21   CGUAUGUAGGUAUGUAGGUAU   1   ||||||||||||||||*|||* targets:891   GCAUACAUCCAUACAUGCAUU   911 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343945.1	ncRNA:21   CGUAUGUAGGUAUGUAGGUAU   1   ||||||||||||||||*|||* targets:869   GCAUACAUCCAUACAUGCAUU   889 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343945.1	ncRNA:21   CGUAUGUAGGUAUGUAGGUAU   1   ||||||||||||||||*|||* targets:893   GCAUACAUCCAUACAUGCAUU   913 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343945.1	ncRNA:21   CGUAUGUAGGUAUGUAGGUAU   1   ||||||||||||||||*|||* targets:917   GCAUACAUCCAUACAUGCAUU   937 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_111396.4	ncRNA:21   CGUAU-GUAGGUAUGUAGGUAU   1   **|||-||*||||||||||||| targets:1261   AGAUAUCAACCAUACAUCCAUA   1282 Target Full Sequence	3.0	Arabidopsis thaliana Signal peptidase subunit mRNA	Signal peptidase subunit(AT3G05230)	coding protein	psRNATarget