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BaseInfo

ncRNA ID	novel_ath_miR852
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr5:15521138-15521267 [-]
Reference genome	TAIR10
Source	SRR1163504
Length	22
Mature sequence(if miRNA)	1 - UAUGGAUGUAUGAAUGUAUGCA - 22
Stem-loop(if miRNA)	CA      G  G    A  G    AAUG           GA      G       G    G  GU   UGUAUG AU UAUG AU UAUG    UAUGCAUGUAU  AUGUAU CAUGCAU UAUG AU  A   |||||| || |||| || ||||    |||||||||||  |||||| ||||||| |||| ||   ACGUAU UA GUAU UA GUAU    GUACGUAUGUA  UAUGUA GUAUGUA GUAU UA  U --      G  A    G  G    GUAA           AG      A       A    G  AG
Stem-loop sequence	CAUGUAUGGAUGUAUGAAUGUAUGAAUGUAUGCAUGUAUGAAUGUAUGCAUGCAUGUAUGGAUGUAUGAAUGUAUGAAUGUAUGAAUGUAUGAAUGUAUGCAUGAAUGUAUGGAUGUAUGAAUGUAUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001344266.1	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   |||||||||||||||||||||| targets:712   UGCAUACAUUCAUACAUCCAUA   733 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT5G38747)	coding protein	psRNATarget
NM_001344266.1	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   |*|||||||||||||||||||| targets:764   UUCAUACAUUCAUACAUCCAUA   785 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT5G38747)	coding protein	psRNATarget
NM_001344266.1	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   |||||||||||||||||=|||| targets:740   UGCAUACAUUCAUACAUUCAUA   761 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT5G38747)	coding protein	psRNATarget
NM_001344266.1	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   |||||||||||||||||=|||| targets:808   UGCAUACAUUCAUACAUUCAUA   829 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein partial mRNA	hypothetical protein(AT5G38747)	coding protein	psRNATarget
NM_112496.3	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   **=|||=||||||||||||||* targets:833   ACUAUAUAUUCAUACAUCCAUU   854 Target Full Sequence	2.0	Arabidopsis thaliana NDH-dependent cyclic electron flow 1 (PnsB3), mRNA	NDH-dependent cyclic electron flow 1(PnsB3)	coding protein	psRNATarget
NM_001343945.1	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   |||||*|||*|||||||||||| targets:860   UGCAUUCAUGCAUACAUCCAUA   881 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343945.1	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   |||||*|||*|||||||||||| targets:884   UGCAUUCAUGCAUACAUCCAUA   905 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343945.1	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   |||||*|||*|||||||||||| targets:908   UGCAUUCAUGCAUACAUCCAUA   929 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343945.1	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   |||||*|||*|||||||||||| targets:932   UGCAUUCAUGCAUACAUCCAUA   953 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343946.1	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   |||||*|||*|||||||||||| targets:834   UGCAUUCAUGCAUACAUCCAUA   855 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343946.1	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   |||||*|||*|||||||||||| targets:858   UGCAUUCAUGCAUACAUCCAUA   879 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343946.1	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   |||||*|||*|||||||||||| targets:882   UGCAUUCAUGCAUACAUCCAUA   903 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_001343946.1	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   |||||*|||*|||||||||||| targets:906   UGCAUUCAUGCAUACAUCCAUA   927 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein mRNA	hypothetical protein(AT5G25755)	coding protein	psRNATarget
NM_118809.5	ncRNA:22   ACGUAUGUAAGUAUGUAGGUAU   1   *|==|||||||||||||*|||| targets:1566   CGUGUACAUUCAUACAUACAUA   1587 Target Full Sequence	2.5	Arabidopsis thaliana hydroxyproline-rich glycoprotein family protein (EXT-like), mRNA	hydroxyproline-rich glycoprotein family protein(EXT-like)	coding protein	psRNATarget