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BaseInfo

ncRNA ID novel_ath_miR845
Species Arabidopsis thaliana
Class miRNA
Genome position Chr3:7342887-7342954 [-]
Reference genome TAIR10
Source SRR1163504;SRR1163720;SRR1164378;SRR1164382;SRR1164433;SRR1164434
Length 24
Mature sequence(if miRNA) 45 - AUAUUAGACUGUGGGCUUCCAACC - 68
Stem-loop(if miRNA) --    U   C      -  -    A    AAA  A
  AUAU AGA UGUGGG CU UCCA CCUA   CC A
  |||| ||| |||||| || |||| ||||   ||
  UAUA UCU AUACCC GA AGGU GGAU   GG U
UA    U   -      A  G    -    AAC  U
Stem-loop sequence AUAUUAGACUGUGGGCUUCCAACCUAAAACCAAUUGGCAAUAGGUGGAGAGACCCAUAUCUUAUAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
DQ446767.1
ncRNA:24   CCAACCUUCGGGUGUCAGAUUAUA   1
  ||||||||||||||||||||||||
targets:477   GGUUGGAAGCCCACAGUCUAAUAU   500

0.0 Arabidopsis thaliana clone pENTR221-At3g55930 RNA splicing factor-like protein (At3g55930) mRNA, complete cds NA coding protein psRNATarget
NM_112987.1
ncRNA:24   CCAACCUUCGGGUGUCAGAUUAUA   1
  |||||||||||||||||||||||*
targets:150   GGUUGGAAGCCCACAGUCUAAUAA   173

1.0 Arabidopsis thaliana cytochrome P450, family 705, subfamily A, polypeptide 32 (CYP705A32), partial mRNA cytochrome P450, family 705, subfamily A, polypeptide 32(CYP705A32) coding protein psRNATarget