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BaseInfo

ncRNA ID novel_ath_miR840
Species Arabidopsis thaliana
Class miRNA
Genome position Chr2:4072729-4072805 [-]
Reference genome TAIR10
Source SRR1163504
Length 23
Mature sequence(if miRNA) 55 - GAUAUGAUUUUCGGUAGUGUAUA - 77
Stem-loop(if miRNA) --   AUG     CG          -----     ---A   A
  GAU   AUUUU  GUAGUGUAUA     GGGGU    GGA U
  |||   |||||  ||||||||||     |||||    ||| A
  CUA   UAAGG  UAUUAUAUAU     CCCCA    CCU U
AA   --G     AU          UAUUA     GUAC   U
Stem-loop sequence GAUAUGAUUUUCGGUAGUGUAUAGGGGUAGGAAUAUUUCCCAUGACCCCAUUAUUAUAUAUUAUUAGGAAUGAUCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_125808.3
ncRNA:23   AUAUGUGAUGGCUUUUAGUAUAG   1
  |||*||*|*|||||||||||||=
targets:1317   UAUUCAAUUCCGAAAAUCAUAUU   1339

3.0 Arabidopsis thaliana Peroxidase superfamily protein mRNA Peroxidase superfamily protein(AT5G64120) coding protein psRNATarget