ncRNA ID | novel_ath_miR840 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr2:4072729-4072805 [-] |
Reference genome | TAIR10 |
Source | SRR1163504 |
Length | 23 |
Mature sequence(if miRNA) | 55 - GAUAUGAUUUUCGGUAGUGUAUA - 77 |
Stem-loop(if miRNA) |
--   AUG     CG          -----     ---A   A   GAU   AUUUU  GUAGUGUAUA     GGGGU    GGA U   |||   |||||  ||||||||||     |||||    ||| A   CUA   UAAGG  UAUUAUAUAU     CCCCA    CCU U AA   --G     AU          UAUUA     GUAC   U |
Stem-loop sequence | GAUAUGAUUUUCGGUAGUGUAUAGGGGUAGGAAUAUUUCCCAUGACCCCAUUAUUAUAUAUUAUUAGGAAUGAUCAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_125808.3 |
|
3.0 | Arabidopsis thaliana Peroxidase superfamily protein mRNA | Peroxidase superfamily protein(AT5G64120) | coding protein | psRNATarget |