Search result

BaseInfo

ncRNA ID	ath-miRf10519-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - ACUCGACCAGGGGGUCGAGUGGUG - NA
Stem-loop(if miRNA)	G AG          AA           GU  G   GAG     GU ACGUGAU G  UUACUCGACC  UUGGUCGAGUG  GU AUU   UGAUG  U ||||||| |  ||||||||||  |||||||||||  || |||   ||||| UGUGCUA U  GGUGAGCUGG  GACCAGCUCAU  UA UGG   GUUAU  A        G GU          GG           AG  G   --A     GG
Stem-loop sequence	ACGUGAUGGAGUUACUCGACCAAUUGGUCGAGUGGUGUGAUUGAGUGAUGGUUAGGUAUUGAGGUGAUGAUACUCGACCAGGGGGUCGAGUGGUGUGAUCGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   |||||||||||||||||||||||| targets:88   CACCACUCGACCCCCUGGUCGAGU   111 Target Full Sequence	0.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   |=|||||||||||||||||||||| targets:228   CGCCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:24   GUGG-UGAGCUGGGGGACCAGCUCA   1   ||=|-|||||||||||||||||||| targets:178   CAUCUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   |=|||||||||||||||||||||| targets:228   CGCCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   GUGG-UGAGCUGGGGGACCAGCUCA   1   ||=|-|||||||||||||||||||| targets:178   CAUCUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||||| targets:122   AACCACUCGACCCCCUGGUCGAGU   145 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||||| targets:497   AACCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||||||||||| targets:497   AACCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:24   GUGG--UGAGCUGGGGGACCAGCUCA   1   ||||--|||||||||||||||||||| targets:304   CACCUUACUCGACCCCCUGGUCGAGU   329 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
EF183042.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *|=||||||||||||||||||||| targets:1569   GAUCACUCGACCCCCUGGUCGAGU   1592 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   ====||||*||||||||||||||| targets:299   UGUUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   ====||||*||||||||||||||| targets:299   UGUUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   ||==||*||||||||||||||||| targets:581   CAUUACYCGACCCCCUGGUCGAGU   604 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT025674.1	ncRNA:24   GUGG-UGAGCUGGGGGACCAGCUCA   1   ||=|-|||||||||||*|||||||| targets:184   CAUCUACUCGACCCCCAGGUCGAGU   208 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   ||||||||||||||*||||||||| targets:533   CACCACUCGACCCCAUGGUCGAGU   556 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *|||||||||||||*||||||||| targets:487   GACCACUCGACCCCGUGGUCGAGU   510 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *||||||||||||||*|||||||| targets:1102   GACCACUCGACCCCCAGGUCGAGU   1125 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:24   GUGGUGAGCUGGGGGACCAGCUCA   1   *|||||||||||||*||||||||| targets:1207   AACCACUCGACCCCGUGGUCGAGU   1230 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget