Search result

BaseInfo

ncRNA ID novel_ath_miR829
Species Arabidopsis thaliana
Class miRNA
Genome position Chr4:8718301-8718485 [-]
Reference genome TAIR10
Source ERR1297309;ERR1297313;ERR1297320
Length 24
Mature sequence(if miRNA) 1 - GUGACUAUUUUGCAAAUUAUGAAU - 24
Stem-loop(if miRNA) --                 U        C                    G   U                     A     ----   U    G
  UCAUAAUUUGCAAAGUA UCACUUUU ACUGUUUGAUUCGUAUACUU GAU GUACAUCAUUUUUAGUGUACA AUGUA    AAG GUAC C
  ||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| |||||    ||| |||| U
  AGUAUUAAACGUUUUAU AGUGGAAA UGACAAACUAAGCAUGUGAA CUA CAUGUGGUGAAAAUCACAUGU UACAU    UUU UAUG G
UA                 C        A                    G   U                     A     AUAU   U    U
Stem-loop sequence UCAUAAUUUGCAAAGUAUUCACUUUUCACUGUUUGAUUCGUAUACUUGGAUUGUACAUCAUUUUUAGUGUACAAAUGUAAAGUGUACGCUGUGUAUUUUUUAUAUACAUAUGUACACUAAAAGUGGUGUACUAUCGAAGUGUACGAAUCAAACAGUAAAAGGUGACUAUUUUGCAAAUUAUGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_105281.3
ncRNA:24   UAAGUAUUAAACGUUUUAUCAGUG   1
  |||||*||||||||||=|||||||
targets:946   AUUCAAAAUUUGCAAAGUAGUCAC   969

2.5 Arabidopsis thaliana Plant thionin mRNA Plant thionin(AT1G66100) coding protein psRNATarget