ncRNA ID | novel_ath_miR829 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr4:8718301-8718485 [-] |
Reference genome | TAIR10 |
Source | ERR1297309;ERR1297313;ERR1297320 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GUGACUAUUUUGCAAAUUAUGAAU - 24 |
Stem-loop(if miRNA) |
--                 U        C                    G   U                     A     ----   U    G   UCAUAAUUUGCAAAGUA UCACUUUU ACUGUUUGAUUCGUAUACUU GAU GUACAUCAUUUUUAGUGUACA AUGUA    AAG GUAC C   ||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| |||||    ||| |||| U   AGUAUUAAACGUUUUAU AGUGGAAA UGACAAACUAAGCAUGUGAA CUA CAUGUGGUGAAAAUCACAUGU UACAU    UUU UAUG G UA                 C        A                    G   U                     A     AUAU   U    U |
Stem-loop sequence | UCAUAAUUUGCAAAGUAUUCACUUUUCACUGUUUGAUUCGUAUACUUGGAUUGUACAUCAUUUUUAGUGUACAAAUGUAAAGUGUACGCUGUGUAUUUUUUAUAUACAUAUGUACACUAAAAGUGGUGUACUAUCGAAGUGUACGAAUCAAACAGUAAAAGGUGACUAUUUUGCAAAUUAUGAAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_105281.3 |
|
2.5 | Arabidopsis thaliana Plant thionin mRNA | Plant thionin(AT1G66100) | coding protein | psRNATarget |