Search result

BaseInfo

ncRNA ID	ath-miRf10517-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - GGGUCGAGUGAUCUGUUGAGAUC - NA
Stem-loop(if miRNA)	UGGUGG      UGA               UAGAGUAAUGAGA        U  U - G  A  GAA G  AAGA            U      A  -----  G G    AG  A UCGAG      UGAUGG   UACUCGACUUCCAGG             UCGAGUAG GG C U GC AU   G UG    CACUCGACCUUG GGUCGA UG     AU U AUCG  UG U |||||      ||||||   |||||||||||||||             |||||||| || | | || ||   | ||    |||||||||||| |||||| ||     || | ||||  || G AGUUC      GUUGUC   GUGAGCUGGGGGUCC             AGCUCAUC CC G A UG UG   U GU    GUGAGCUGGGGC CCAGCU AC     UA G UAGU  AC G      --UAGA      -UA               -------------        U  U U G  A  AAG G  -GUA            U      C  AGAAG  G G    GG  U
Stem-loop sequence	UCGAGUGGUGGUGAUGGUGAUACUCGACUUCCAGGUAGAGUAAUGAGAUCGAGUAGUGGUCUGGCAAUGAAGGUGAAGACACUCGACCUUGUGGUCGAAUGAUGUGAUCGAGUGAUGGUCAGGUGAUGGGAUGAAGACACUCGACCUCGGGGUCGAGUGAUGUGGUGAAGUAGUGAUGUCCUCUACUCGACCUGGGGGUCGAGUGAUCUGUUGAGAUCUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183042.1	ncRNA:23   CUAGAGUUGUCUAGUGAGCUGGG   1   ||||||||*|||||||||||||| targets:1559   GAUCUCAAAAGAUCACUCGACCC   1581 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:23   CUAGAGUUGUCUAGUGAGCUGGG   1   ||**||||||||*|||||||||| targets:477   GACAUCAACAGACCACUCGACCC   499 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   CUAGAGUUGUCUAGUGAGCUGGG   1   *|*=|||*||*|||||||||||| targets:1605   UACUUCACCACAUCACUCGACCC   1627 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:23   CUAGAGUUGUCUAGUGAGCUGGG   1   ||||||||*|||*|||||||||| targets:1092   GAUCUCAAGAGACCACUCGACCC   1114 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget