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BaseInfo

ncRNA ID novel_ath_miR800
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:15661411-15661491 [+]
Reference genome TAIR10
Source ERR958566
Length 23
Mature sequence(if miRNA) 1 - UUAGUUCGUGAUCGGUUGUAUCC - 23
Stem-loop(if miRNA) --       --G            UCC  - GAUUCAUAAAUC
  UUAGUUC   UGAUCGGUUGUA   UG A            G
  |||||||   ||||||||||||   || |
  AAUUAAG   AUUAGCCGGCAU   CA G            U
GG       UUA            --U  U AAAAACCUGUAC
Stem-loop sequence UUAGUUCGUGAUCGGUUGUAUCCUGAGAUUCAUAAAUCGUCAUGUCCAAAAAGUACUUACGGCCGAUUAAUUGAAUUAAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_114314.5
ncRNA:23   CCUAUGUUGGCUAGUGCUUGAUU   1
  |||||||||||||||||||||||
targets:1642   GGAUACAACCGAUCACGAACUAA   1664

0.0 Arabidopsis thaliana Basic-leucine zipper (bZIP) transcription factor family protein (DPBF2), mRNA Basic-leucine zipper (bZIP) transcription factor family protein(DPBF2) coding protein psRNATarget