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BaseInfo

ncRNA ID	ath-miRf10515-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GGAGAAGACUCUGAAGCUGG - NA
Stem-loop(if miRNA)	G  A      --            UC    UU UG  UG G G UCGA UG UUAGCU  GGAGUCUUCUUU  UUCC  G  CU  A U U |||| || ||||||  ||||||||||||  ||||  |  ||  | | AGCU AC GGUCGA  UCUCAGAAGAGG  AAGG  C  GA  U G C     A  -      AG            -U    -- GU  GU G U
Stem-loop sequence	UCGAGUGAUUAGCUGGAGUCUUCUUUUCUUCCUUGUGCUUGAGUGUCUGGUUGAGUGCGGAAUGGAGAAGACUCUGAAGCUGGCAAUCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   |||||||||||||||||||| targets:398   CCAGCUUCAGAGUCUUCUCC   417 Target Full Sequence	0.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   |||||*|||||||||||||| targets:743   CCAGCYUCAGAGUCUUCUCC   762 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
EF183192.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   |=|||||||||||||||||| targets:763   CUAGCUUCAGAGUCUUCUCC   782 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   |=|||||||||||||||||| targets:1090   CUAGCUUCAGAGUCUUCUCC   1109 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   |=|||||||||||||||||| targets:1138   CUAGCUUCAGAGUCUUCUCC   1157 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
AY084487.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   =|||||||*||||||||||| targets:13   UCAGCUUCUGAGUCUUCUCC   32 Target Full Sequence	1.5	Arabidopsis thaliana clone 109398 mRNA, complete sequence	NA	coding protein	psRNATarget
BX824225.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   =|||||||*||||||||||| targets:2   UCAGCUUCUGAGUCUUCUCC   21 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH30ZH04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_111963.3	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   =|||||||*||||||||||| targets:198   UCAGCUUCUGAGUCUUCUCC   217 Target Full Sequence	1.5	Arabidopsis thaliana Duplicated homeodomain-like superfamily protein mRNA	Duplicated homeodomain-like superfamily protein(AT3G11280)	coding protein	psRNATarget
NM_180227.4	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   =|||||||*||||||||||| targets:162   UCAGCUUCUGAGUCUUCUCC   181 Target Full Sequence	1.5	Arabidopsis thaliana Duplicated homeodomain-like superfamily protein mRNA	Duplicated homeodomain-like superfamily protein(AT3G11280)	coding protein	psRNATarget
BT024864.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   =|||||*|||||*||||||| targets:548   UCAGCUCCAGAGGCUUCUCC   567 Target Full Sequence	2.5	Arabidopsis thaliana At5g40150 gene, complete cds	NA	coding protein	psRNATarget
Y11791.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   =|||||*|||||*||||||| targets:393   UCAGCUCCAGAGGCUUCUCC   412 Target Full Sequence	2.5	A.thaliana mRNA for peroxidase ATP26a, partial	NA	coding protein	psRNATarget
BT012620.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   =||||*|||||*|||||||| targets:690   UCAGCAUCAGAAUCUUCUCC   709 Target Full Sequence	2.5	Arabidopsis thaliana At5g65170 gene, complete cds	NA	coding protein	psRNATarget
NM_001345674.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   =||||*|||||*|||||||| targets:569   UCAGCAUCAGAAUCUUCUCC   588 Target Full Sequence	2.5	Arabidopsis thaliana VQ motif-containing protein mRNA	VQ motif-containing protein(AT5G65170)	coding protein	psRNATarget
AK118632.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   =|||||*|||||*||||||| targets:585   UCAGCUCCAGAGGCUUCUCC   604 Target Full Sequence	2.5	Arabidopsis thaliana At5g40150 mRNA for putative peroxidase ATP26a, complete cds, clone: RAFL19-90-A15	NA	coding protein	psRNATarget
BT011679.1	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   =||||*|||||*|||||||| targets:725   UCAGCAUCAGAAUCUUCUCC   744 Target Full Sequence	2.5	Arabidopsis thaliana At5g65170 gene, complete cds	NA	coding protein	psRNATarget
NM_123378.3	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   =|||||*|||||*||||||| targets:855   UCAGCUCCAGAGGCUUCUCC   874 Target Full Sequence	2.5	Arabidopsis thaliana Peroxidase superfamily protein mRNA	Peroxidase superfamily protein(AT5G40150)	coding protein	psRNATarget
NM_125915.4	ncRNA:20   GGUCGAAGUCUCAGAAGAGG   1   =||||*|||||*|||||||| targets:863   UCAGCAUCAGAAUCUUCUCC   882 Target Full Sequence	2.5	Arabidopsis thaliana VQ motif-containing protein mRNA	VQ motif-containing protein(AT5G65170)	coding protein	psRNATarget