loadScript ./j2s/core/package.js
loadScript ./j2s/core/corejmol.z.js
JSmol exec jmolApplet0 start applet null
Jmol JavaScript applet jmolApplet0__495013332023729__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript true
AppletRegistry.checkIn(jmolApplet0__495013332023729__)
vwrOptions:
{ "name":"jmolApplet0","allowJavaScript":true,"applet":true,"documentBase":"http://isyslab.info/StraPep/show_detail.php?id=BP0584","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__495013332023729__","codePath":"http://isyslab.info/StraPep/./j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"495013332023729","bgcolor":"#FFFFFF" }
setting document base to "http://isyslab.info/StraPep/show_detail.php?id=BP0584"
(C) 2015 Jmol Development
Jmol Version: 14.4.2_2016.02.14 2016-02-14 21:09
java.vendor: Java2Script (HTML5)
java.version: 2016-02-14 19:46:51 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet0 (signed)
loadScript ./j2s/core/corescript.z.js
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
backgroundColor = "#FFFFFF"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue IMAGECallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue SERVICECallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet0__495013332023729__ ready
loadScript ./j2s/core/corebio.z.js
script 1 started
antialiasDisplay = true
FileManager.getAtomSetCollectionFromFile(data/2MCWA.pdb)
FileManager opening url http://isyslab.info/StraPep/data/2MCWA.pdb
The Resolver thinks Pdb
ANTIMICROBIAL PROTEIN 27-AUG-13 2MCW
2MCW
Time for openFile(data/2MCWA.pdb): 360 ms
reading 362 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Babel
362 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Jmol 14.4.2_2016.02.14 2016-02-14 21:09 DSSP analysis for model 1.1 - 2MCW
W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637
We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,
and we thank the CMBI for maintaining it to the extent that it was easy to
re-engineer for our purposes. At this point in time, we make no guarantee
that this code gives precisely the same analysis as the code available via license
from CMBI at http://swift.cmbi.ru.nl/gv/dssp
All bioshapes have been deleted and must be regenerated.
NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.
Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.
ANTIMICROBIAL PROTEIN 27-AUG-13 2MCW
2MCW
loadScript ./j2s/core/corescriptcmd.z.js
0 atoms selected
0 atoms selected
loadScript ./j2s/core/coretext.z.js
362 atoms selected
Script completed
Jmol script terminated
loadScript ./j2s/J/g3d/HermiteRenderer.js
