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BaseInfo

ncRNA ID osa-miRf11627-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - CCCCUCCUGCCAGAUCUGGCAG - NA
Stem-loop(if miRNA)    AU    C   CC           -           GCCCCACCGCCUCGCCUC    AGCCGACCCGCCGCCGCCGC
GCC  CUCC CUC  GCUAGAUCUGG AGGAGGGGAGG                  AUGC                    A
|||  |||| |||  ||||||||||| |||||||||||                  ||||                    U
CGG  GAGG GAG  CGGUCUAGACC UCCUCCCCUCC                  CAGC                    C
   --    C   -A           G           --------------ACCA    CACCGCGCUGCCACCUUCCC
Stem-loop sequence GCCAUCUCCCCUCCCGCUAGAUCUGGAGGAGGGGAGGGCCCCACCGCCUCGCCUCAUGCAGCCGACCCGCCGCCGCCGCAUCCCCUUCCACCGUCGCGCCACCGACACCACCUCCCCUCCUGCCAGAUCUGGCAGAGCGGAGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK059193.1
ncRNA:22   GACGGUCUAGACCGUCCUCCCC   1
  ||||||||||||||=|||||||
targets:364   CUGCCAGAUCUGGCGGGAGGGG   385

1.5 Oryza sativa Japonica Group cDNA clone:001-023-H10, full insert sequence NA coding protein psRNATarget
AK106473.1
ncRNA:22   GA--CGGUCUAGACCGUCCUCCCC   1
  ||--||||||||||||||||||||
targets:116   CUCCGCCAGAUCUGGCAGGAGGGG   139

0.0 Oryza sativa Japonica Group cDNA clone:002-104-B03, full insert sequence NA coding protein psRNATarget
AK062576.1
ncRNA:22   GACGGUCUAGACCGUCCUCCCC   1
  ||||||||||||||*|||||||
targets:303   CUGCCAGAUCUGGCCGGAGGGG   324

1.5 Oryza sativa Japonica Group cDNA clone:001-047-C05, full insert sequence NA coding protein psRNATarget
AK062576.1
ncRNA:22   GACGGUCUAGACCGUCCUCCCC   1
  *|||||||||||||||||*|||
targets:196   AUGCCAGAUCUGGCAGGAAGGG   217

1.5 Oryza sativa Japonica Group cDNA clone:001-047-C05, full insert sequence NA coding protein psRNATarget
AK241224.1
ncRNA:22   GA--CGGUCUAGACCGUCCUCCCC   1
  ||--||=|||||||||||||||||
targets:339   CUCCGCUAGAUCUGGCAGGAGGGG   362

1.0 Oryza sativa Japonica Group cDNA, clone: J065124H21, full insert sequence NA coding protein psRNATarget
AK241165.1
ncRNA:22   GA--CGGUCUAGACCGUCCUCCCC   1
  ||--||=|||||||||=|||||||
targets:64   CUCAGCUAGAUCUGGCGGGAGGGG   87

2.5 Oryza sativa Japonica Group cDNA, clone: J065116E15, full insert sequence NA coding protein psRNATarget
AK242361.1
ncRNA:22   GACGGUCUAGACCGUCCUCCCC   1
  |||||||||||*|||||||||*
targets:249   CUGCCAGAUCUAGCAGGAGGGA   270

2.5 Oryza sativa Japonica Group cDNA, clone: J080030E24, full insert sequence NA coding protein psRNATarget
AK120300.1
ncRNA:22   GACGGUCUAGACCGUCCUCCCC   1
  *|||||||||||||||||*|||
targets:221   AUGCCAGAUCUGGCAGGAAGGG   242

1.5 Oryza sativa Japonica Group cDNA clone:J013052E03, full insert sequence NA coding protein psRNATarget
AK069452.1
ncRNA:22   GA--CGGUCUAGACCGUCCUCCCC   1
  ||--||=||||||*||||||||||
targets:259   CUCCGCUAGAUCUAGCAGGAGGGG   282

2.5 Oryza sativa Japonica Group cDNA clone:J023019F19, full insert sequence NA coding protein psRNATarget
CT829056.1
ncRNA:22   GACGGUCUAGACCGUCCUCCCC   1
  ||*|||||||||||*|||||||
targets:163   CUCCCAGAUCUGGCUGGAGGGG   184

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA041L15, full insert sequence NA coding protein psRNATarget
AK073111.1
ncRNA:22   GACGGUCUAGACCGUCCUCCCC   1
  ||*|||||||||||*|||||||
targets:295   CUCCCAGAUCUGGCCGGAGGGG   316

1.5 Oryza sativa Japonica Group cDNA clone:J033022M24, full insert sequence NA coding protein psRNATarget
AK068287.1
ncRNA:22   GACGGUCUAGACCGUCCUCCCC   1
  ||*|||||||||||*|||||||
targets:281   CUCCCAGAUCUGGCCGGAGGGG   302

1.5 Oryza sativa Japonica Group cDNA clone:J013149F18, full insert sequence NA coding protein psRNATarget
AK120802.1
ncRNA:22   GACGGUCUAGACCGUCCUCCCC   1
  ||*|||||||||||*|||||||
targets:987   CUCCCAGAUCUGGCUGGAGGGG   1008

1.5 Oryza sativa Japonica Group cDNA clone:J023013A15, full insert sequence NA coding protein psRNATarget
AK120802.1
ncRNA:22   GACGGUCUAGACCGUCCUCCCC   1
  ||*|=|||||||||*|||||||
targets:926   CUCCUAGAUCUGGCCGGAGGGG   947

2.5 Oryza sativa Japonica Group cDNA clone:J023013A15, full insert sequence NA coding protein psRNATarget
CT828525.1
ncRNA:22   GA--CGGUCUAGACCGUCCUCCCC   1
  ||--|||=||||||||*|||||||
targets:159   CUCCGCCGGAUCUGGCUGGAGGGG   182

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA009F03, full insert sequence NA coding protein psRNATarget
AK107919.1
ncRNA:22   GA--CGGUCUAGACCGUCCUCCCC   1
  ||--|||=|||||*||||||||||
targets:230   CUCCGCCGGAUCUAGCAGGAGGGG   253

2.5 Oryza sativa Japonica Group cDNA clone:002-134-H02, full insert sequence NA coding protein psRNATarget
AK103059.1
ncRNA:22   GA--CGGUCUAGACCGUCCUCCCC   1
  ||--||=||||*||||||||||||
targets:430   CUCCGCUAGAUGUGGCAGGAGGGG   453

2.5 Oryza sativa Japonica Group cDNA clone:J033117L12, full insert sequence NA coding protein psRNATarget
AK071991.1
ncRNA:22   GA--CGGUCUAGACCGUCCUCCCC   1
  ||--||=||||*||||||||||||
targets:359   CUCCGCUAGAUGUGGCAGGAGGGG   382

2.5 Oryza sativa Japonica Group cDNA clone:J013092P07, full insert sequence NA coding protein psRNATarget
AK099057.1
ncRNA:22   GA--CGGUCUAGACCGUCCUCCCC   1
  ||--||=||||*||||||||||||
targets:336   CUCCGCUAGAUGUGGCAGGAGGGG   359

2.5 Oryza sativa Japonica Group cDNA clone:J013155E13, full insert sequence NA coding protein psRNATarget
AK242014.1
ncRNA:22   GACGGUCUAGACCGUCCUCCCC   1
  ||*|=|||||||||*|||||||
targets:180   CUCCUAGAUCUGGCCGGAGGGG   201

2.5 Oryza sativa Japonica Group cDNA, clone: J075109F05, full insert sequence NA coding protein psRNATarget
XM_015757507.1
ncRNA:22   GA---CGGUCUAGACCGUCCUCCCC   1
  ||---||=|||||||||*|||||||
targets:2082   CUUUCGCUAGAUCUGGCUGGAGGGG   2106

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268466 (LOC9268466), transcript variant X2, mRNA uncharacterized LOC9268466(LOC9268466) coding protein psRNATarget
AK288478.1
ncRNA:22   GACGGUCUAGACCGUCCUCCCC   1
  ||*|||*|||||||*|||||||
targets:2599   CUCCCAUAUCUGGCCGGAGGGG   2620

2.5 Oryza sativa Japonica Group cDNA, clone: J090038D21, full insert sequence NA coding protein psRNATarget
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