Search result

BaseInfo

ncRNA ID	osa-miRf11614-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - CGUGUCCAACGUUUGACUGUC - NA
Stem-loop(if miRNA)	U                              UA      -AUAUUUUU      ---U     UUUUUAUUGCUGUUAGAUGAUAAAACA  CUGGGUUUUCGUGUCCAACGUUUGACUGUC  UCUUAU         UUAUAA    UAAUA                           U  ||||||||||||||||||||||||||||||  ||||||         ||||||    |||||                           G  GACCUAAAGGCACGGGUUGCAAACUGGCAG  AGAAUA         AAUAUU    UAAUU                           A G                              GC      AACUUUUUU      UUUU     UUUCUAUUCAGUACGUAUUUCAUAAUU
Stem-loop sequence	UCUGGGUUUUCGUGUCCAACGUUUGACUGUCUAUCUUAUAUAUUUUUUUAUAAUUAAUAUUUUUAUUGCUGUUAGAUGAUAAAACAUGAUUAAUACUUUAUGCAUGACUUAUCUUUUUAAUUUUUUUAUAAUUUUUUCAAAUAAGACGGACGGUCAAACGUUGGGCACGGAAAUCCAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT827968.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   |||=||||||||||||||||| targets:466   GACGGUCAAACGUUGGACACG   486 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN031I05, full insert sequence	NA	coding protein	psRNATarget
AK108746.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   |||=||||||||||||||||| targets:1443   GACGGUCAAACGUUGGACACG   1463 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-150-E12, full insert sequence	NA	coding protein	psRNATarget
XM_015787836.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   |||=||||||||||||||||| targets:1250   GACGGUCAAACGUUGGACACG   1270 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342071 (LOC4342071), mRNA	uncharacterized LOC4342071(LOC4342071)	coding protein	psRNATarget
XM_015787694.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   |||=||||||||||||||||| targets:1496   GACGGUCAAACGUUGGACACG   1516 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group acetylajmalan esterase (LOC4341925), mRNA	acetylajmalan esterase(LOC4341925)	coding protein	psRNATarget
AK071262.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   |||=||||||||||||||||| targets:1378   GACGGUCAAACGUUGGACACG   1398 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023085J06, full insert sequence	NA	coding protein	psRNATarget
AK288706.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   |||=||||||||||||||||| targets:3076   GACGGUCAAACGUUGGACACG   3096 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090061L24, full insert sequence	NA	coding protein	psRNATarget
XM_015782022.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   |||=||||||||||||=|||| targets:1544   GACGGUCAAACGUUGGGCACG   1564 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X1, mRNA	zinc transporter 9(LOC4339080)	coding protein	psRNATarget
AK065567.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   |||=||||||||||||=|||| targets:968   GACGGUCAAACGUUGGGCACG   988 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013033D20, full insert sequence	NA	coding protein	psRNATarget
AK288264.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   |||=||||||||||||=|||| targets:98   GACGGUCAAACGUUGGGCACG   118 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090016E18, full insert sequence	NA	coding protein	psRNATarget
XM_015782023.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   |||=||||||||||||=|||| targets:2586   GACGGUCAAACGUUGGGCACG   2606 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc transporter 9 (LOC4339080), transcript variant X2, mRNA	zinc transporter 9(LOC4339080)	coding protein	psRNATarget
XM_015759207.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   *||=||||||||||||||||| targets:57   AACGGUCAAACGUUGGACACG   77 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group piriformospora indica-insensitive protein 2 (LOC4323927), mRNA	piriformospora indica-insensitive protein 2(LOC4323927)	coding protein	psRNATarget
XM_015761929.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   |||=||||||||||||||||* targets:26   GACGGUCAAACGUUGGACACA   46 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4350187), transcript variant X2, mRNA	disease resistance protein RGA2(LOC4350187)	coding protein	psRNATarget
AK288670.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   *||=||||||||||||=|||| targets:1073   AACGGUCAAACGUUGGGCACG   1093 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090058O04, full insert sequence	NA	coding protein	psRNATarget
AK288606.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   |||||||||||||||*||||* targets:2492   GACAGUCAAACGUUGUACACA   2512 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090052P16, full insert sequence	NA	coding protein	psRNATarget
AK068180.1	ncRNA:21   CUGUCAGUUUGCAACCUGUGC   1   *|*||*||||||||||||||| targets:457   AAAAGACAAACGUUGGACACG   477 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013135E14, full insert sequence	NA	coding protein	psRNATarget