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BaseInfo

ncRNA ID novel_zma_miR7986
Species Zea mays
Class miRNA
Genome position Chr9:111791259-111791380 [-]
Reference genome RefGen_v4
Source SRR3385575
Length 20
Mature sequence(if miRNA) 1 - GGCAAGUUGUCCUUGGCUAC - 20
Stem-loop(if miRNA) --         UG          UAUUUU A    -     U  CAG   AG  --UA G   U
  AGCCAAGGA  ACUUGCCGGG      G GCAU GCAUG UA   GGG  CA    U CAA C
  |||||||||  ||||||||||      | |||| ||||| ||   |||  ||    | ||| U
  UCGGUUCCU  UGAACGGCCU      C CGUG CGUGC AU   CCC  GU    A GUU G
CA         GU          -UCUGU -    G     C  --A   GA  UUUA G   U
Stem-loop sequence AGCCAAGGAUGACUUGCCGGGUAUUUUGAGCAUGCAUGUUACAGGGGAGCAUAUGCAAUCUGUUUGGAAUUUUGAGCCCAUACCGUGCGGUGCCUGUCUUCCGGCAAGUUGUCCUUGGCUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020548143.1
ncRNA:20   CAUCGGUUCCUGU-UGAACGG   1
  |||||||||||||-|||||||
targets:692   GUAGCCAAGGACAGACUUGCC   712

3.0 PREDICTED: Zea mays uncharacterized LOC103648407 (LOC103648407), mRNA NA coding protein psRNATarget
BT060668.2
ncRNA:20   CAUCGGUUCCUGU-UGAACGG   1
  |||||||||||||-|||||||
targets:948   GUAGCCAAGGACAGACUUGCC   968

3.0 Zea mays full-length cDNA clone ZM_BFb0031E01 mRNA, complete cds NA coding protein psRNATarget