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BaseInfo

ncRNA ID	novel_zma_miR7974
Species	Zea mays
Class	miRNA
Genome position	Chr8:144161145-144161240 [-]
Reference genome	RefGen_v4
Source	SRR3385575
Length	20
Mature sequence(if miRNA)	1 - GACACUCGGCAAAGAGAACU - 20
Stem-loop(if miRNA)	--AAG               AAA                   UACAAU      UCUUUGUCGAGUGUC   UGGGUGGCACUCGGCAAAG      G      |||||||||||||||   |||||||||||||||||||      AGAAACGGCUCACAG   GCCCACUGUGAGCUGUUUC      A UCAAG               GGG                   UAAUAA
Stem-loop sequence	AAGUCUUUGUCGAGUGUCAAAUGGGUGGCACUCGGCAAAGUACAAUGAAAUAAUCUUUGUCGAGUGUCACCCGGGGGACACUCGGCAAAGAGAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU974507.1	ncRNA:20   UCAA--GAGAAACGGCUCACAG   1   =|||--|||||||||||||||| targets:608   GGUUACCUCUUUGCCGAGUGUC   629 Target Full Sequence	2.5	Zea mays clone 451014 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ050721.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   ||*|||=||||||||||||| targets:47   AGAUCUUUUUGCCGAGUGUC   66 Target Full Sequence	2.0	TSA: Zea mays contig51841, mRNA sequence	NA	coding protein	psRNATarget
JB166953.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   ||||=*=||||||||||||| targets:64   AGUUUGUUUUGCCGAGUGUC   83 Target Full Sequence	3.0	Sequence 4617 from Patent EP2559767	NA	coding protein	psRNATarget
HI406492.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   ||||=*=||||||||||||| targets:64   AGUUUGUUUUGCCGAGUGUC   83 Target Full Sequence	3.0	Sequence 4617 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238622.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   ||||=*=||||||||||||| targets:64   AGUUUGUUUUGCCGAGUGUC   83 Target Full Sequence	3.0	Sequence 4617 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   *||*=||||||||||||||| targets:804   CGUGUUCUUUGCCGAGUGUC   823 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   *||*=||||||||||||||| targets:804   CGUGUUCUUUGCCGAGUGUC   823 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
JB167100.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   ||||**|||||||||||||| targets:57   AGUUACCUUUGCCGAGUGUC   76 Target Full Sequence	2.0	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
HI406639.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   ||||**|||||||||||||| targets:57   AGUUACCUUUGCCGAGUGUC   76 Target Full Sequence	2.0	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   ||||**|||||||||||||| targets:57   AGUUACCUUUGCCGAGUGUC   76 Target Full Sequence	2.0	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008680068.2	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   |***|||||||||||||||| targets:125   AAACCUCUUUGCCGAGUGUC   144 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA	NA	coding protein	psRNATarget
LQ241100.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   =|||*|||*||||||||||| targets:66   GGUUGUCUCUGCCGAGUGUC   85 Target Full Sequence	2.5	Sequence 7095 from Patent EP2985353	NA	coding protein	psRNATarget
HI408970.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   =|||*|||*||||||||||| targets:66   GGUUGUCUCUGCCGAGUGUC   85 Target Full Sequence	2.5	Sequence 7095 from Patent EP2074227	NA	coding protein	psRNATarget
JB169431.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   =|||*|||*||||||||||| targets:66   GGUUGUCUCUGCCGAGUGUC   85 Target Full Sequence	2.5	Sequence 7095 from Patent EP2559767	NA	coding protein	psRNATarget
EZ063137.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   =|||*||*|||||||||||| targets:215   GGUUGUCAUUGCCGAGUGUC   234 Target Full Sequence	2.5	TSA: Zea mays contig64259, mRNA sequence	NA	coding protein	psRNATarget
EU951420.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   =|||*|||*||||||||||| targets:347   GGUUGUCUCUGCCGAGUGUC   366 Target Full Sequence	2.5	Zea mays clone 701735 mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:20   UCAAG-AGAAACGGCUCACAG   1   *|||*-||||||||||||||| targets:1359   CGUUAGUCUUUGCCGAGUGUC   1379 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:20   UCAAG-AGAAACGGCUCACAG   1   *|||*-||||||||||||||| targets:1496   CGUUAGUCUUUGCCGAGUGUC   1516 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:20   UCAAG-AGAAACGGCUCACAG   1   *|||*-||||||||||||||| targets:1496   CGUUAGUCUUUGCCGAGUGUC   1516 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
EU971646.1	ncRNA:20   UCAAGAGAAACGGCUCACAG   1   ***|*||||||||||||||| targets:825   UCGUGUCUUUGCCGAGUGUC   844 Target Full Sequence	3.0	Zea mays clone 368614 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget