Search result

BaseInfo

ncRNA ID novel_vvi_miR304
Species Vitis vinifera
Class miRNA
Genome position Chr13:15108773-15108835 [-]
Reference genome 12X
Source SRR1528351;SRR1528357;SRR1528372;SRR1528386;SRR1528387;SRR1528416;SRR1528417
Length 24
Mature sequence(if miRNA) 40 - UGUGGCUAGCGUGGGCUUUGAACU - 63
Stem-loop(if miRNA) --U    C          U          AA
   GUGG UAGCGUGGGC UUGAACUAAU  A
   |||| |||||||||| ||||||||||  A
   UACC GUCGCACUCG AACUUGAUUA  A
CUU    A          U          AA
Stem-loop sequence UGUGGCUAGCGUGGGCUUUGAACUAAUAAAAAAAAUUAGUUCAAUGCUCACGCUGACCAUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA139114.1
ncRNA:24   UCAAGUUUCGGGUGCGAUCGGUGU   1
  *|*|||||||*|||*|||||||||
targets:5311   CGGUCAAAGCACACUCUAGCCACA   5334

2.5 TSA: Vitis vinifera Locus_5042_Transcript_7/9_Confidence_0.394.Vivi mRNA sequence NA coding protein psRNATarget