ncRNA ID | novel_vvi_miR260 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr14:28302581-28302654 [-] |
Reference genome | 12X |
Source | SRR1528351;SRR1528373;SRR1528380;SRR1528394;SRR1528412 |
Length | 22 |
Mature sequence(if miRNA) | 53 - UUGUCGCAGGAGAGACGGCACU - 74 |
Stem-loop(if miRNA) |
--              A    AC     -      UAG   UUGUCGCAGGAGAG CGGC  UUGCU CUUGUG   C   |||||||||||||| ||||  ||||| ||||||   AACAGUGUCCUCUC GCCG  AACGG GAACGU   A AG              -    CU     C      UAA |
Stem-loop sequence | UUGUCGCAGGAGAGACGGCACUUGCUCUUGUGUAGCAAAUUGCAAGCGGCAAUCGCCGCUCUCCUGUGACAAGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA138596.1 |
|
3.0 | TSA: Vitis vinifera Locus_1488_Transcript_4/9_Confidence_0.592.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
KA138597.1 |
|
3.0 | TSA: Vitis vinifera Locus_1488_Transcript_8/9_Confidence_0.592.Vivi mRNA sequence | NA | coding protein | psRNATarget |