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BaseInfo

ncRNA ID novel_vvi_miR260
Species Vitis vinifera
Class miRNA
Genome position Chr14:28302581-28302654 [-]
Reference genome 12X
Source SRR1528351;SRR1528373;SRR1528380;SRR1528394;SRR1528412
Length 22
Mature sequence(if miRNA) 53 - UUGUCGCAGGAGAGACGGCACU - 74
Stem-loop(if miRNA) --              A    AC     -      UAG
  UUGUCGCAGGAGAG CGGC  UUGCU CUUGUG   C
  |||||||||||||| ||||  ||||| ||||||
  AACAGUGUCCUCUC GCCG  AACGG GAACGU   A
AG              -    CU     C      UAA
Stem-loop sequence UUGUCGCAGGAGAGACGGCACUUGCUCUUGUGUAGCAAAUUGCAAGCGGCAAUCGCCGCUCUCCUGUGACAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA138596.1
ncRNA:22   UCACGGCAGAGAGGACGCUGUU   1
  =|||=|*||||||||||||||=
targets:182   GGUGUCAUCUCUCCUGCGACAG   203

3.0 TSA: Vitis vinifera Locus_1488_Transcript_4/9_Confidence_0.592.Vivi mRNA sequence NA coding protein psRNATarget
KA138597.1
ncRNA:22   UCACGGCAGAGAGGACGCUGUU   1
  =|||=|*||||||||||||||=
targets:182   GGUGUCAUCUCUCCUGCGACAG   203

3.0 TSA: Vitis vinifera Locus_1488_Transcript_8/9_Confidence_0.592.Vivi mRNA sequence NA coding protein psRNATarget