Search result

BaseInfo

ncRNA ID novel_vvi_miR259
Species Vitis vinifera
Class miRNA
Genome position Chr14:23579001-23579080 [+]
Reference genome 12X
Source SRR1528351;SRR1528363;SRR1528383;SRR1528392;SRR1528404;SRR1528406;SRR1528408;SRR1528417
Length 24
Mature sequence(if miRNA) 1 - GUUAGAGGAGAGUGGAUGUAGGCC - 24
Stem-loop(if miRNA) ---GU   A      U          CG  UUGCGCCGAAC
     UAG GGAGAG GGAUGUAGGC  GG           C
     ||| |||||| ||||||||||  ||           A
     AUC CUUCUC CUUACGUUUG  UG           C
UUCUC   C      U          --  UUCUCAAAUAU
Stem-loop sequence GUUAGAGGAGAGUGGAUGUAGGCCGGGUUGCGCCGAACCACUAUAAACUCUUGUGUUUGCAUUCUCUCUUCCCUACUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA157323.1
ncRNA:24   CCGGAUGUAGGUGAGAGGAGAUUG   1
  ||||||||||||||||||||||=|
targets:42   GGCCUACAUCCACUCUCCUCUAGC   65

1.5 TSA: Vitis vinifera Locus_23973_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget