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BaseInfo

ncRNA ID novel_vvi_miR249
Species Vitis vinifera
Class miRNA
Genome position Chr10:4660943-4661037 [+]
Reference genome 12X
Source SRR1528351;SRR1528356;SRR1528357;SRR1528362;SRR1528364;SRR1528372;SRR1528378;SRR1528380;SRR1528383;SRR1528385;SRR1528391;SRR1528406;SRR1528417
Length 21
Mature sequence(if miRNA) 75 - UAAGGACUAAAUUGGUAGACC - 95
Stem-loop(if miRNA) --C        C                  A     CAACAAU     A
   CUACCAAU UAGUUUUUAGGGUUUGUG GGUUU       GUUAC U
   |||||||| |||||||||||||||||| |||||       ||||| G
   GAUGGUUA AUCAGGAAUCCCAAACAC CUAAA       CGAUG G
CCA        A                  C     ----ACU     A
Stem-loop sequence CCUACCAAUCUAGUUUUUAGGGUUUGUGAGGUUUCAACAAUGUUACAUGGAGUAGCUCAAAAUCCCACAAACCCUAAGGACUAAAUUGGUAGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA160101.1
ncRNA:21   CCAGAUGGUUAAAUCAGGAAU   1
  **|||||=||||||||=||||
targets:697   CUUCUACUAAUUUAGUUCUUA   717

2.5 TSA: Vitis vinifera Locus_12533_Transcript_6/7_Confidence_0.353.Vivi mRNA sequence NA coding protein psRNATarget