ncRNA ID | novel_vvi_miR249 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr10:4660943-4661037 [+] |
Reference genome | 12X |
Source | SRR1528351;SRR1528356;SRR1528357;SRR1528362;SRR1528364;SRR1528372;SRR1528378;SRR1528380;SRR1528383;SRR1528385;SRR1528391;SRR1528406;SRR1528417 |
Length | 21 |
Mature sequence(if miRNA) | 75 - UAAGGACUAAAUUGGUAGACC - 95 |
Stem-loop(if miRNA) |
--C        C                  A     CAACAAU     A    CUACCAAU UAGUUUUUAGGGUUUGUG GGUUU       GUUAC U    |||||||| |||||||||||||||||| |||||       ||||| G    GAUGGUUA AUCAGGAAUCCCAAACAC CUAAA       CGAUG G CCA        A                  C     ----ACU     A |
Stem-loop sequence | CCUACCAAUCUAGUUUUUAGGGUUUGUGAGGUUUCAACAAUGUUACAUGGAGUAGCUCAAAAUCCCACAAACCCUAAGGACUAAAUUGGUAGACC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA160101.1 |
|
2.5 | TSA: Vitis vinifera Locus_12533_Transcript_6/7_Confidence_0.353.Vivi mRNA sequence | NA | coding protein | psRNATarget |