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BaseInfo

ncRNA ID	novel_vvi_miR247
Species	Vitis vinifera
Class	miRNA
Genome position	Chr6:9137267-9137437 [+]
Reference genome	12X
Source	SRR1528350;SRR1528361;SRR1528375;SRR1528376;SRR1528386
Length	22
Mature sequence(if miRNA)	150 - CUUGGACUGAAGGGAGCUCCCU - 171
Stem-loop(if miRNA)	--A                 CU      UG  UU      UU  A   G  G   AC        U  AA        AAUG   AU    GAGCUUCCUUCAGUCCA  CAUGGA  GG  AGGGGU  GG UUA CU CCG  UCAUUCAU CA  CACAGUAG    GAA  G    |||||||||||||||||  ||||||  ||  ||||||  || ||| || |||  |||||||| ||  ||||||||    |||    CUCGAGGGAAGUCAGGU  GUGUCU  UC  UUCCUA  UU AAU GA GGC  AGUAAGUG GU  GUGUCAUC    UUU  G UCC                 UC      GU  UU      CU  A   G  G   GU        U  AA        ---A   GA
Stem-loop sequence	AGAGCUUCCUUCAGUCCACUCAUGGAUGGGUUAGGGGUUUGGAUUAGCUGCCGACUCAUUCAUUCAAACACAGUAGAAUGGAAAUGGAGUUUACUACUGUGAAUGUGUGAAUGAUGCGGGAGGUAAAUUUCAUCCUUUUCUUGUCUGUGCUUGGACUGAAGGGAGCUCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA139082.1	ncRNA:22   UCCCUCGAGGGAAGUCAGGUUC   1   **|||||||||||||||||||* targets:770   UAGGAGCUCCCUUCAGUCCAAA   791 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_12971_Transcript_1/9_Confidence_0.250.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139083.1	ncRNA:22   UCCCUCGAGGGAAGUCAGGUUC   1   **|||||||||||||||||||* targets:2080   UAGGAGCUCCCUUCAGUCCAAA   2101 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_12971_Transcript_2/9_Confidence_0.583.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139084.1	ncRNA:22   UCCCUCGAGGGAAGUCAGGUUC   1   **|||||||||||||||||||* targets:2927   UAGGAGCUCCCUUCAGUCCAAA   2948 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_12971_Transcript_4/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KX639825.1	ncRNA:22   UC--CCUCGAGGGAAGUCAGGUUC   1   ||--|||||||||||||*|||||* targets:954   AGUUGGAGCUCCCUUCACUCCAAU   977 Target Full Sequence	2.5	UNVERIFIED: Vitis vinifera GAMYB-like mRNA, complete sequence	NA	coding protein	psRNATarget
XM_019217706.1	ncRNA:22   UC--CCUCGAGGGAAGUCAGGUUC   1   ||--|||||||||||||*|||||* targets:1073   AGUUGGAGCUCCCUUCACUCCAAU   1096 Target Full Sequence	2.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_019217705.1	ncRNA:22   UC--CCUCGAGGGAAGUCAGGUUC   1   ||--|||||||||||||*|||||* targets:1427   AGUUGGAGCUCCCUUCACUCCAAU   1450 Target Full Sequence	2.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_019217704.1	ncRNA:22   UC--CCUCGAGGGAAGUCAGGUUC   1   ||--|||||||||||||*|||||* targets:1434   AGUUGGAGCUCCCUUCACUCCAAU   1457 Target Full Sequence	2.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X5, mRNA	NA	coding protein	psRNATarget
KA143670.1	ncRNA:22   UC--CCUCGAGGGAAGUCAGGUUC   1   ||--|||||||||||||*|||||* targets:1420   AGUUGGAGCUCCCUUCACUCCAAU   1443 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3605_Transcript_9/9_Confidence_0.444.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010647229.2	ncRNA:22   UC--CCUCGAGGGAAGUCAGGUUC   1   ||--|||||||||||||*|||||* targets:1479   AGUUGGAGCUCCCUUCACUCCAAU   1502 Target Full Sequence	2.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010647226.2	ncRNA:22   UC--CCUCGAGGGAAGUCAGGUUC   1   ||--|||||||||||||*|||||* targets:1486   AGUUGGAGCUCCCUUCACUCCAAU   1509 Target Full Sequence	2.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_002275810.4	ncRNA:22   UC--CCUCGAGGGAAGUCAGGUUC   1   ||--|||||||||||||*|||||* targets:1746   AGUUGGAGCUCCCUUCACUCCAAU   1769 Target Full Sequence	2.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010647228.2	ncRNA:22   UC--CCUCGAGGGAAGUCAGGUUC   1   ||--|||||||||||||*|||||* targets:1815   AGUUGGAGCUCCCUUCACUCCAAU   1838 Target Full Sequence	2.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X2, mRNA	NA	coding protein	psRNATarget