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BaseInfo

ncRNA ID novel_vvi_miR243
Species Vitis vinifera
Class miRNA
Genome position Chr3:17925350-17925434 [-]
Reference genome 12X
Source SRR1528350;SRR1528353;SRR1528372;SRR1528381;SRR1528388;SRR1528395
Length 24
Mature sequence(if miRNA) 1 - AUAUUAUGGGACUACAUGUGUUAC - 24
Stem-loop(if miRNA) --U           G    C          AAG  UA     U
   ACACAUGUAGU CCAU AUAUGAAGAA   UG  UGAUU U
   ||||||||||| |||| ||||||||||   ||  ||||| U
   UGUGUACAUCA GGUA UAUAUUUCUU   AC  ACUAA U
CAU           G    U          --G  UA     U
Stem-loop sequence UACACAUGUAGUGCCAUCAUAUGAAGAAAAGUGUAUGAUUUUUUUAAUCAAUCAGUUCUUUAUAUUAUGGGACUACAUGUGUUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA164868.1
ncRNA:24   CAUUGUGUACAUCAGGGUAUUAUA   1
  *|***|=||||=||||||||||||
targets:1405   UUCCAAUAUGUGGUCCCAUAAUAU   1428

2.5 TSA: Vitis vinifera Locus_2467_Transcript_23/25_Confidence_0.038.Vivi mRNA sequence NA coding protein psRNATarget
XM_002285375.3
ncRNA:24   CAUUGUGUACAUCAGGGUAUUAUA   1
  *|***|=||||=||||||||||||
targets:1411   UUCCAAUAUGUGGUCCCAUAAUAU   1434

2.5 PREDICTED: Vitis vinifera uncharacterized LOC100267343 (LOC100267343), mRNA NA coding protein psRNATarget