ncRNA ID | novel_vvi_miR243 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr3:17925350-17925434 [-] |
Reference genome | 12X |
Source | SRR1528350;SRR1528353;SRR1528372;SRR1528381;SRR1528388;SRR1528395 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AUAUUAUGGGACUACAUGUGUUAC - 24 |
Stem-loop(if miRNA) |
--U           G    C          AAG  UA     U    ACACAUGUAGU CCAU AUAUGAAGAA   UG  UGAUU U    ||||||||||| |||| ||||||||||   ||  ||||| U    UGUGUACAUCA GGUA UAUAUUUCUU   AC  ACUAA U CAU           G    U          --G  UA     U |
Stem-loop sequence | UACACAUGUAGUGCCAUCAUAUGAAGAAAAGUGUAUGAUUUUUUUAAUCAAUCAGUUCUUUAUAUUAUGGGACUACAUGUGUUAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA164868.1 |
|
2.5 | TSA: Vitis vinifera Locus_2467_Transcript_23/25_Confidence_0.038.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
XM_002285375.3 |
|
2.5 | PREDICTED: Vitis vinifera uncharacterized LOC100267343 (LOC100267343), mRNA | NA | coding protein | psRNATarget |