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BaseInfo

ncRNA ID novel_vvi_miR242
Species Vitis vinifera
Class miRNA
Genome position Chr3:3951674-3951744 [-]
Reference genome 12X
Source SRR1528350
Length 23
Mature sequence(if miRNA) 49 - GAGGAGAGUGGACGUAGGCAAAG - 71
Stem-loop(if miRNA) --        U   C  A    AAGAAGUGCCGAAC
  GAGGAGAG GGA GU GGCA              U
  |||||||| ||| || ||||              A
  CUCUUCUC UCU CA GUUU              C
AU        -   -  C    GUGCUCUCAAAUAU
Stem-loop sequence GAGGAGAGUGGACGUAGGCAAAGAAGUGCCGAACUACUAUAAACUCUCGUGUUUGCACUCUCUCUUCUCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA157323.1
ncRNA:23   GAAACGGAUGCAGGUGAGAGGAG   1
  |***||||||*||||||||||||
targets:39   CCCGGCCUACAUCCACUCUCCUC   61

1.5 TSA: Vitis vinifera Locus_23973_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget