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BaseInfo

ncRNA ID	novel_vvi_miR240
Species	Vitis vinifera
Class	miRNA
Genome position	Chr17:3675987-3676186 [-]
Reference genome	12X
Source	SRR1528350;SRR1528354;SRR1528357;SRR1528360;SRR1528374;SRR1528380;SRR1528381;SRR1528384;SRR1528396;SRR1528404;SRR1528410;SRR1528417
Length	20
Mature sequence(if miRNA)	1 - UUGGACUGAAGGGAGCUCCC - 20
Stem-loop(if miRNA)	--                   AA  A    U   G -    -CC  -A   G    C       CUU     U     ------U  U    U  AU  -        GAGCUCCUUUUAGUCCAAU  AG GGGC GAG G GCGG   AG  GCU CCAU UCAUGCA   GGCUA GCUUA       UC UUUC CA  CA AUUCGG   |||||||||||||||||||  || |||| ||| | ||||   ||  ||| |||| |||||||   ||||| |||||       || |||| ||  || |||||U   CUCGAGGGAAGUCAGGUUA  UC CCCG UUC C CGCC   UC  CGA GGUA AGUACGU   CCGAU UGAAU       AG GAGG GU  GU UGAGCU CC                   -C  A    U   G A    UCC  AA   G    C       AGU     U     CGUAAAC  U    U  CG  A
Stem-loop sequence	GAGCUCCUUUUAGUCCAAUAAAGAGGGCUGAGGGGCGGCCAGAGCUGCCAUCUCAUGCACUUGGCUAUGCUUAUUCUUUUCUCAAUCAAUUCGGUUCGAGUAUGGCUGUGGAGUGACAAAUGCUAAGUUUAGCCUGAUGCAUGACAUGGGAGCAACUCCUCCGCACGCUUUGCCCACUCAUUGGACUGAAGGGAGCUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA139082.1	ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1   *||||||||||||||||||| targets:771   AGGAGCUCCCUUCAGUCCAA   790 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12971_Transcript_1/9_Confidence_0.250.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139083.1	ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1   *||||||||||||||||||| targets:2081   AGGAGCUCCCUUCAGUCCAA   2100 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12971_Transcript_2/9_Confidence_0.583.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA139084.1	ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1   *||||||||||||||||||| targets:2928   AGGAGCUCCCUUCAGUCCAA   2947 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_12971_Transcript_4/9_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget
KX639825.1	ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:957   UGGAGCUCCCUUCACUCCAA   976 Target Full Sequence	1.5	UNVERIFIED: Vitis vinifera GAMYB-like mRNA, complete sequence	NA	coding protein	psRNATarget
XM_019217706.1	ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1076   UGGAGCUCCCUUCACUCCAA   1095 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_019217705.1	ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1430   UGGAGCUCCCUUCACUCCAA   1449 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_019217704.1	ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1437   UGGAGCUCCCUUCACUCCAA   1456 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X5, mRNA	NA	coding protein	psRNATarget
KA143670.1	ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1423   UGGAGCUCCCUUCACUCCAA   1442 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3605_Transcript_9/9_Confidence_0.444.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_010647229.2	ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1482   UGGAGCUCCCUUCACUCCAA   1501 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010647226.2	ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1489   UGGAGCUCCCUUCACUCCAA   1508 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_002275810.4	ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1749   UGGAGCUCCCUUCACUCCAA   1768 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010647228.2	ncRNA:20   CCCUCGAGGGAAGUCAGGUU   1   *|||||||||||||*||||| targets:1818   UGGAGCUCCCUUCACUCCAA   1837 Target Full Sequence	1.5	PREDICTED: Vitis vinifera transcription factor GAMYB (LOC100248959), transcript variant X2, mRNA	NA	coding protein	psRNATarget