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BaseInfo

ncRNA ID novel_vvi_miR239
Species Vitis vinifera
Class miRNA
Genome position Chr10:16494359-16494416 [+]
Reference genome 12X
Source SRR1528350;SRR1528385;SRR1528389
Length 19
Mature sequence(if miRNA) 40 - GCGGGCCGGGCUGGCGGGC - 58
Stem-loop(if miRNA) --    -          -A G       GA
  CCGU GGCCCGGCCU  U AGCCCGC  G
  |||| ||||||||||  | |||||||
  GGCG UCGGGCCGGG  G UCGGGCG  C
CG    G          CG G       AU
Stem-loop sequence CCGUGGCCCGGCCUAUGAGCCCGCGAGCUAGCGGGCUGGGCGGGCCGGGCUGGCGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA162119.1
ncRNA:19   CGGGCGGUCGGGCCGGGCG   1
  ||||*|||||||*||||||
targets:3   GCCCCCCAGCCCAGCCCGC   21

2.5 TSA: Vitis vinifera Locus_10829_Transcript_1/4_Confidence_0.625.Vivi mRNA sequence NA coding protein psRNATarget
KA162118.1
ncRNA:19   CGGGCGGUCGGGCCGGGCG   1
  ||||*|||||||*||||||
targets:3   GCCCCCCAGCCCAGCCCGC   21

2.5 TSA: Vitis vinifera Locus_10829_Transcript_2/4_Confidence_0.500.Vivi mRNA sequence NA coding protein psRNATarget