ncRNA ID | novel_vvi_miR239 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr10:16494359-16494416 [+] |
Reference genome | 12X |
Source | SRR1528350;SRR1528385;SRR1528389 |
Length | 19 |
Mature sequence(if miRNA) | 40 - GCGGGCCGGGCUGGCGGGC - 58 |
Stem-loop(if miRNA) |
--    -          -A G       GA   CCGU GGCCCGGCCU  U AGCCCGC  G   |||| ||||||||||  | |||||||   GGCG UCGGGCCGGG  G UCGGGCG  C CG    G          CG G       AU |
Stem-loop sequence | CCGUGGCCCGGCCUAUGAGCCCGCGAGCUAGCGGGCUGGGCGGGCCGGGCUGGCGGGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA162119.1 |
|
2.5 | TSA: Vitis vinifera Locus_10829_Transcript_1/4_Confidence_0.625.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
KA162118.1 |
|
2.5 | TSA: Vitis vinifera Locus_10829_Transcript_2/4_Confidence_0.500.Vivi mRNA sequence | NA | coding protein | psRNATarget |