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BaseInfo

ncRNA ID novel_vvi_miR235
Species Vitis vinifera
Class miRNA
Genome position Chr14:2337541-2337609 [+]
Reference genome 12X
Source SRR1528350
Length 23
Mature sequence(if miRNA) 1 - GAGGAGAGUGGACGUAGGCAAAG - 23
Stem-loop(if miRNA) --        U GAC        -   ------    CC
  GAGGAGAG G   GUAGGCAA AGA      AGUG  G
  |||||||| |   |||||||| |||      ||||
  CUUCUCUC C   CGUUUGUU UCU      UCAC  A
CC        U --A        C   CAAAUA    CA
Stem-loop sequence GAGGAGAGUGGACGUAGGCAAAGAAGUGCCGAACCACUAUAAACUCUCUUGUUUGCACUCUCUCUUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA157323.1
ncRNA:23   GAAACGGAUGCAGGUGAGAGGAG   1
  |***||||||*||||||||||||
targets:39   CCCGGCCUACAUCCACUCUCCUC   61

1.5 TSA: Vitis vinifera Locus_23973_Transcript_1/1_Confidence_1.000.Vivi mRNA sequence NA coding protein psRNATarget