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BaseInfo

ncRNA ID	novel_vvi_miR233
Species	Vitis vinifera
Class	miRNA
Genome position	Chr1:1341991-1342163 [-]
Reference genome	12X
Source	SRR1528350;SRR1528353;SRR1528356;SRR1528364;SRR1528367;SRR1528372;SRR1528374;SRR1528378;SRR1528380;SRR1528384;SRR1049289;SRR1528387;SRR1528388;SRR1528389;SRR1528391;SRR1528392;SRR1528399;SRR1528404;SRR1528409;SRR1528417
Length	24
Mature sequence(if miRNA)	150 - GAUGAGAUGUCGCGGAUUAUGAUG - 173
Stem-loop(if miRNA)	--       U  C                      C             C                   ACU   AUUUUAUCAAGU   GAUGAGA GU GCGGAUUAUGAUGAAUUAAUUU UCUUUUUAUAUGC UUUGUCACAUGUAAUUUUU   GAG            U   ||||||| || |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||   |||            U   CUACUCU CA CGUCUAAUACUAUUUAAUUAAA AGAAAAAUAUACG AAACAGUGUACAUUAAAAA   CAC            C CC       U  A                      U             A                   --A   UUUAUGUGCUCU
Stem-loop sequence	GAUGAGAUGUCGCGGAUUAUGAUGAAUUAAUUUCUCUUUUUAUAUGCCUUUGUCACAUGUAAUUUUUACUGAGAUUUUAUCAAGUUUCUCUCGUGUAUUUCACAAAAAAUUACAUGUGACAAAAGCAUAUAAAAAGAUAAAUUAAUUUAUCAUAAUCUGCAACUUCUCAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA135312.1	ncRNA:24   GUAGUAUUAGGCGCUGUAGAGUAG   1   |||||||||||||||||||||||| targets:533   CAUCAUAAUCCGCGACAUCUCAUC   556 Target Full Sequence	0.0	TSA: Vitis vinifera Locus_17872_Transcript_2/8_Confidence_0.292.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA144773.1	ncRNA:24   GUAGUAUUAGGCGCUGUAGAGUAG   1   ||-||||||=||||*||||||||| targets:1160   CA-CAUAAUUCGCGCCAUCUCAUC   1182 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_6771_Transcript_2/6_Confidence_0.500.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA144774.1	ncRNA:24   GUAGUAUUAGGCGCUGUAGAGUAG   1   ||-||||||=||||*||||||||| targets:1193   CA-CAUAAUUCGCGCCAUCUCAUC   1215 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_6771_Transcript_3/6_Confidence_0.643.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA144776.1	ncRNA:24   GUAGUAUUAGGCGCUGUAGAGUAG   1   ||-||||||=||||*||||||||| targets:1278   CA-CAUAAUUCGCGCCAUCUCAUC   1300 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_6771_Transcript_5/6_Confidence_0.214.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA144775.1	ncRNA:24   GUAGUAUUAGGCGCUGUAGAGUAG   1   ||-||||||=||||*||||||||| targets:1655   CA-CAUAAUUCGCGCCAUCUCAUC   1677 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_6771_Transcript_4/6_Confidence_0.500.Vivi mRNA sequence	NA	coding protein	psRNATarget