Search result

BaseInfo

ncRNA ID novel_vvi_miR232
Species Vitis vinifera
Class miRNA
Genome position Chr11:19800808-19800879 [+]
Reference genome 12X
Source SRR1528350;SRR1528351;SRR1528357;SRR1528363;SRR1528372;SRR1528389
Length 21
Mature sequence(if miRNA) 1 - CAUAUCAUGCUCUUUAGGACU - 21
Stem-loop(if miRNA) --                          A    UUG
  CAUAUCAUGCUCUUUAGGACUCCAAA UGCA   U
  |||||||||||||||||||||||||| ||||
  GUAUAGUACGAGAAAUUCUGAGGUUU ACGU   G
AU                          A    UUU
Stem-loop sequence CAUAUCAUGCUCUUUAGGACUCCAAAAUGCAUUGUGUUUUGCAAUUUGGAGUCUUAAAGAGCAUGAUAUGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
KA167505.1
ncRNA:21   UCAGGAUUUCUCGUACUAUAC   1
  =||==|||||||||||||||*
targets:1861   GGUUUUAAAGAGCAUGAUAUA   1881

3.0 TSA: Vitis vinifera Locus_18370_Transcript_3/4_Confidence_0.700.Vivi mRNA sequence NA coding protein psRNATarget
KA134514.1
ncRNA:21   UCAGGAUUUCUCGUACUAUAC   1
  |**|=|=||||||||||||||
targets:1582   ACCCUUGAAGAGCAUGAUAUG   1602

3.0 TSA: Vitis vinifera Locus_9892_Transcript_18/19_Confidence_0.026.Vivi mRNA sequence NA coding protein psRNATarget