ncRNA ID | novel_vvi_miR232 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr11:19800808-19800879 [+] |
Reference genome | 12X |
Source | SRR1528350;SRR1528351;SRR1528357;SRR1528363;SRR1528372;SRR1528389 |
Length | 21 |
Mature sequence(if miRNA) | 1 - CAUAUCAUGCUCUUUAGGACU - 21 |
Stem-loop(if miRNA) |
--                          A    UUG   CAUAUCAUGCUCUUUAGGACUCCAAA UGCA   U   |||||||||||||||||||||||||| ||||   GUAUAGUACGAGAAAUUCUGAGGUUU ACGU   G AU                          A    UUU |
Stem-loop sequence | CAUAUCAUGCUCUUUAGGACUCCAAAAUGCAUUGUGUUUUGCAAUUUGGAGUCUUAAAGAGCAUGAUAUGUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KA167505.1 |
|
3.0 | TSA: Vitis vinifera Locus_18370_Transcript_3/4_Confidence_0.700.Vivi mRNA sequence | NA | coding protein | psRNATarget | |||||||||
KA134514.1 |
|
3.0 | TSA: Vitis vinifera Locus_9892_Transcript_18/19_Confidence_0.026.Vivi mRNA sequence | NA | coding protein | psRNATarget |