ncRNA ID | novel_vvi_miR228 |
Species | Vitis vinifera |
Class | miRNA |
Genome position | Chr7:20911319-20911519 [-] |
Reference genome | 12X |
Source | SRR1528350 |
Length | 24 |
Mature sequence(if miRNA) | 178 - GAACAUAGAUUACUUUAGAGGACU - 201 |
Stem-loop(if miRNA) |
--        AU  C        A       U  C   A     UG   AUUUU             --G   U     -GUUGA      AGCU     GC   GAACAUAG  UA UUUAGAGG CUUCUAA UG UAC CAAUG  AAA     GAGGGGAAAAUUC   UGU UGAUA      UAUCAG    UCAUU  A   ||||||||  || |||||||| ||||||| || ||| |||||  |||     |||||||||||||   ||| |||||      ||||||    |||||  C   CUUGUAUC  AU GAAUCUCC GAAGAUU GC GUG GUUGU  UUU     UUCCCCUUUUAAG   GCG ACUAU      GUGGUU    AGUAA  U CA        CU  C        C       U  A   A     GU   AUAAU             GAA   C     GUGAAG      -GGU     AA |
Stem-loop sequence | GAACAUAGAUUACUUUAGAGGACUUCUAAUUGCUACACAAUGUGAAAAUUUUGAGGGGAAAAUUCGUGUUUGAUAGUUGAUAUCAGAGCUUCAUUGCACUAAAAUGAUGGUUGGUGGAAGUGUAUCACGCGAAGGAAUUUUCCCCUUUAAUAUUUUGUGUUGAGUGACGUUUAGAAGCCCUCUAAGCUAUCCUAUGUUCAC |