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BaseInfo

ncRNA ID	novel_vvi_miR220
Species	Vitis vinifera
Class	miRNA
Genome position	Chr8:21763265-21763478 [+]
Reference genome	12X
Source	SRR1049373
Length	21
Mature sequence(if miRNA)	194 - UUCAGCCAAAAAACAAACAUC - 214
Stem-loop(if miRNA)	--     UU                                         C                C  UG  A       C        C    G         U   UGUUU  UUUUUUGGUUGAAUAGAAAAAGCCAAAAUAUUUGACUUUUU UAUUUAGUUAAAAGUA UU  UU AUAUUAA CAACAUAA UAAA UGAACUUGU A   |||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||  || ||||||| |||||||| |||| ||||||||| U   ACAAA  AAAAAACCGACUUAUCUUUUUCGGUUUUAUAAACUGAAAAA AUAAGUCGAUUUUCAU GA  AA UGUAGUU GUUGUAUU AUUU AUUUGAACA C CU     -C                                         A                U  GU  C       A        A    G         A
Stem-loop sequence	UGUUUUUUUUUUUGGUUGAAUAGAAAAAGCCAAAAUAUUUGACUUUUUCUAUUUAGUUAAAAGUACUUUGUUAAUAUUAACCAACAUAACUAAAGUGAACUUGUUAUCAACAAGUUUAGUUUAAUUAUGUUGAUUGAUGUCAAUGAGUUACUUUUAGCUGAAUAAAAAAAGUCAAAUAUUUUGGCUUUUUCUAUUCAGCCAAAAAACAAACAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA167155.1	ncRNA:21   CUACAAACAAAAAACCGACUU   1   |=||||||||||||||=|||| targets:3627   GGUGUUUGUUUUUUGGUUGAA   3647 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_485_Transcript_5/10_Confidence_0.429.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167153.1	ncRNA:21   CUACAAACAAAAAACCGACUU   1   |=||||||||||||||=|||| targets:3409   GGUGUUUGUUUUUUGGUUGAA   3429 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_485_Transcript_1/10_Confidence_0.492.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142774.1	ncRNA:21   CUACAAACAAAAAACCGACUU   1   *|||||||||||||||=|||| targets:1329   AAUGUUUGUUUUUUGGUUGAA   1349 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3457_Transcript_5/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142775.1	ncRNA:21   CUACAAACAAAAAACCGACUU   1   *|||||||||||||||=|||| targets:1229   AAUGUUUGUUUUUUGGUUGAA   1249 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3457_Transcript_8/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_019224211.1	ncRNA:21   CUACAAACAAAAAACCGACUU   1   |=||||||||||||||*|||| targets:6928   GGUGUUUGUUUUUUGGAUGAA   6948 Target Full Sequence	1.5	PREDICTED: Vitis vinifera uncharacterized LOC100263302 (LOC100263302), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:21   CUACAAACAAAAAACCGACUU   1   |=|||||||||||||*||||| targets:1838   GGUGUUUGUUUUUUGACUGAA   1858 Target Full Sequence	1.5	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget
KA159067.1	ncRNA:21   CUACAAACAAAAAACCGACUU   1   *=|*||||||||||||=|||| targets:1282   CGUAUUUGUUUUUUGGUUGAA   1302 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_4980_Transcript_3/7_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA172889.1	ncRNA:21   CUACAAACAAAAAACCGACUU   1   |=*|||||||||||||||*|| targets:3789   GGCGUUUGUUUUUUGGCUAAA   3809 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_787_Transcript_4/6_Confidence_0.529.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002277846.3	ncRNA:21   CUACAAACAAAAAACCGACUU   1   *||||||*||||||||||*|| targets:1603   UAUGUUUUUUUUUUGGCUAAA   1623 Target Full Sequence	2.5	PREDICTED: Vitis vinifera probable WRKY transcription factor 23 (LOC100264006), mRNA	NA	coding protein	psRNATarget
KA141750.1	ncRNA:21   CUACAAACAAAAAACCGACUU   1   **|||||||*||||||||||* targets:1033   UUUGUUUGUCUUUUGGCUGAC   1053 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_7460_Transcript_7/8_Confidence_0.500.Vivi mRNA sequence	NA	coding protein	psRNATarget