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BaseInfo

ncRNA ID	novel_vvi_miR216
Species	Vitis vinifera
Class	miRNA
Genome position	Chr1:22138103-22138321 [+]
Reference genome	12X
Source	SRR1048203
Length	24
Mature sequence(if miRNA)	196 - UUCAGCCAAAAAACAAACACCAUC - 219
Stem-loop(if miRNA)	--            C      A          ACC         GA        C   C           AUUC     C  C           C        A     U   UGGUGUUUGUUU UUGGCU AAUAGAAAAA   AAAAUAUUU  CUUUUUUU AUU AGUUAAAAGUA    AUUGA AU AACCAACAUAA UAAAUUAA CUUAU G   |||||||||||| |||||| ||||||||||   |||||||||  |||||||| ||| |||||||||||    ||||| || ||||||||||| |||||||| ||||| A   ACCACAAACAAA AACCGA UUAUCUUUUU   UUUUAUAAA  GAAAAAGA UAA UCAAUUUUCGU    UAACU UA UUGGUUGUAUU AUUUAAUU GAAUA U CU            A      C          CCA         AC        -   U           GGAA     A  A           A        -     A
Stem-loop sequence	UGGUGUUUGUUUCUUGGCUAAAUAGAAAAAACCAAAAUAUUUGACUUUUUUUCAUUCAGUUAAAAGUAAUUCAUUGACAUCAACCAACAUAACUAAAUUAAACUUAUUGAUAAUAAGUUAAUUUAAUUAUGUUGGUUAAUAUCAAUAAGGUGCUUUUAACUUAAUAGAAAAAGCAAAAUAUUUUACCUUUUUCUAUUCAGCCAAAAAACAAACACCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA167155.1	ncRNA:24   CUACCACAAACAAAAAACCGACUU   1   |=|||||||||||||||||=|||| targets:3624   GGUGGUGUUUGUUUUUUGGUUGAA   3647 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_485_Transcript_5/10_Confidence_0.429.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167153.1	ncRNA:24   CUACCACAAACAAAAAACCGACUU   1   |=|||||||||||||||||=|||| targets:3406   GGUGGUGUUUGUUUUUUGGUUGAA   3429 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_485_Transcript_1/10_Confidence_0.492.Vivi mRNA sequence	NA	coding protein	psRNATarget
XM_002275318.4	ncRNA:24   CUACCACAAACAAAAAACCGACUU   1   *|||||||||||||||||*||||| targets:1835   UAUGGUGUUUGUUUUUUGACUGAA   1858 Target Full Sequence	1.5	PREDICTED: Vitis vinifera tRNA pseudouridine synthase A (LOC100242086), mRNA	NA	coding protein	psRNATarget
XM_019224211.1	ncRNA:24   CUACCACAAACAAAAAACCGACUU   1   *=|||||||||||||||||*|||| targets:6925   AGUGGUGUUUGUUUUUUGGAUGAA   6948 Target Full Sequence	1.5	PREDICTED: Vitis vinifera uncharacterized LOC100263302 (LOC100263302), transcript variant X2, mRNA	NA	coding protein	psRNATarget
KA142774.1	ncRNA:24   CUACCACAAACAAAAAACCGACUU   1   |||**||||||||||||||=|||| targets:1326   GAUAAUGUUUGUUUUUUGGUUGAA   1349 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3457_Transcript_5/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142775.1	ncRNA:24   CUACCACAAACAAAAAACCGACUU   1   |||**||||||||||||||=|||| targets:1226   GAUAAUGUUUGUUUUUUGGUUGAA   1249 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3457_Transcript_8/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA172889.1	ncRNA:24   CUACCACAAACAAAAAACCGACUU   1   *=|||*|||||||||||||||*|| targets:3786   UGUGGCGUUUGUUUUUUGGCUAAA   3809 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_787_Transcript_4/6_Confidence_0.529.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159067.1	ncRNA:24   CUACCACAAACAAAAAACCGACUU   1   *||*||*||||||||||||=|||| targets:1279   CAUCGUAUUUGUUUUUUGGUUGAA   1302 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_4980_Transcript_3/7_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget