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BaseInfo

ncRNA ID	novel_vvi_miR188
Species	Vitis vinifera
Class	miRNA
Genome position	Chr17:6385525-6385741 [-]
Reference genome	12X
Source	SRR1049372
Length	24
Mature sequence(if miRNA)	1 - AUUCAACUAAAAAACAAACACCAC - 24
Stem-loop(if miRNA)	--                C      A                  U     C     A            C     A     A  C   A   C    G     U   U   GGUGUUUGUUUUUUGG UGAAUA AAAAAAUCAAAAUAUUUG CUUUU UUAUU AGCUAAAAGUAA CUGUU ACAUC UC AAU UAA UAAA UGAAC UGU A   |||||||||||||||| |||||| |||||||||||||||||| ||||| ||||| |||||||||||| ||||| ||||| || ||| ||| |||| ||||| ||| U   CCACAAACAAAAAAUC ACUUAU UUUUUUGGUUUUAUAAAC GAAAA AAUAA UUGAUUUUCAUU GACAA UGUAG AG UUA AUU AUUU ACUUG AUA C CA                A      C                  U     A     G            U     C     C  A   C   C    G     U   A
Stem-loop sequence	GGUGUUUGUUUUUUGGCUGAAUAAAAAAAAUCAAAAUAUUUGUCUUUUCUUAUUAAGCUAAAAGUAACCUGUUAACAUCAUCCAAUAUAACUAAAGUGAACUUGUUAUCAAUAUGUUCAGUUUACUUACAUUAGACGAUGUCAACAGUUUACUUUUAGUUGAAUAAAAAAAGUCAAAUAUUUUGGUUUUUUCUAUUCAACUAAAAAACAAACACCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA167155.1	ncRNA:24   CACCACAAACAAAAAAUCAACUUA   1   ||||||||||||||||=||||||| targets:3625   GUGGUGUUUGUUUUUUGGUUGAAU   3648 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_485_Transcript_5/10_Confidence_0.429.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167153.1	ncRNA:24   CACCACAAACAAAAAAUCAACUUA   1   ||||||||||||||||=||||||| targets:3407   GUGGUGUUUGUUUUUUGGUUGAAU   3430 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_485_Transcript_1/10_Confidence_0.492.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142774.1	ncRNA:24   CACCACAAACAAAAAAUCAACUUA   1   *|**||||||||||||=||||||| targets:1327   AUAAUGUUUGUUUUUUGGUUGAAU   1350 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3457_Transcript_5/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA142775.1	ncRNA:24   CACCACAAACAAAAAAUCAACUUA   1   *|**||||||||||||=||||||| targets:1227   AUAAUGUUUGUUUUUUGGUUGAAU   1250 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_3457_Transcript_8/8_Confidence_0.474.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA170765.1	ncRNA:24   CACCACAAACAAAAAAUCAACUUA   1   ****|||||||*|||||||||||| targets:909   UCCAUGUUUGUGUUUUAGUUGAAU   932 Target Full Sequence	1.5	TSA: Vitis vinifera Locus_529_Transcript_8/10_Confidence_0.548.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA159067.1	ncRNA:24   CACCACAAACAAAAAAUCAACUUA   1   *|*||*||||||||||=||||||| targets:1280   AUCGUAUUUGUUUUUUGGUUGAAU   1303 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_4980_Transcript_3/7_Confidence_0.333.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA145048.1	ncRNA:24   CACCACAAACAAAAA-AUCAACUUA   1   *|**|||||||||||-||||||||| targets:1848   UUUUUGUUUGUUUUUAUAGUUGAAU   1872 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_12731_Transcript_2/3_Confidence_0.667.Vivi mRNA sequence	NA	coding protein	psRNATarget