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BaseInfo

ncRNA ID	novel_vvi_miR185
Species	Vitis vinifera
Class	miRNA
Genome position	Chr15:19377396-19377617 [+]
Reference genome	12X
Source	SRR1049371;SRR1049291
Length	24
Mature sequence(if miRNA)	199 - AAGCCAAAAAACAAACACAACCUA - 222
Stem-loop(if miRNA)	--   G                 G                       A     -                 U          C A        A      G         U   GGU GUGUUUGUUUUUUGGCU AAUAGAAAAAGUCAAAUAUUUUA CUUUU CUAUUCAGCUAAAAGUA CUUAUUGAUA U ACCAAUAU AUUAAA UGAAUUUAU A   ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| | |||||||| |||||| ||||||||| U   CCA CACAAACAAAAAACCGA UUAUCUUUUUUAGUUUAUAAAAU GAAAA GAUAAGUCGAUUUUCAU GAGUAACUGU G UGGUUGUA UAAUUU AUUUGAAUA C AU   A                 A                       C     A                 U          A C        A      G         A
Stem-loop sequence	GGUGGUGUUUGUUUUUUGGCUGAAUAGAAAAAGUCAAAUAUUUUAACUUUUCUAUUCAGCUAAAAGUAUCUUAUUGAUACUAACCAAUAUAAUUAAAGUGAAUUUAUUAUCAAUAAGUUUAGUUUAAUAAUGUUGGUCGAUGUCAAUGAGUUACUUUUAGCUGAAUAGAAAAAGCUAAAAUAUUUGAUUUUUUCUAUUAAGCCAAAAAACAAACACAACCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KA161886.1	ncRNA:24   AUCCAACACAAACAAAAAACCGAA   1   *|*||*|||||||||||||||||| targets:172   AAAGUGGUGUUUGUUUUUUGGCUU   195 Target Full Sequence	1.0	TSA: Vitis vinifera Locus_14723_Transcript_3/3_Confidence_0.750.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA156662.1	ncRNA:24   AU-CCAACACAAACAAAAAACCGAA   1   ||-|||*|||||||||||||*|||| targets:942   UACGGUGGUGUUUGUUUUUUUGCUU   966 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3257_Transcript_8/10_Confidence_0.423.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA156661.1	ncRNA:24   AU-CCAACACAAACAAAAAACCGAA   1   ||-|||*|||||||||||||*|||| targets:868   UACGGUGGUGUUUGUUUUUUUGCUU   892 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_3257_Transcript_10/10_Confidence_0.423.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA163153.1	ncRNA:24   AU-CCAACACAAACAAAAAACCGAA   1   ||-||*|||||**|||||||||||| targets:4795   UAUGGCUGUGUAAGUUUUUUGGCUU   4819 Target Full Sequence	2.5	TSA: Vitis vinifera Locus_19690_Transcript_4/6_Confidence_0.562.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA172889.1	ncRNA:24   AUC----CAACACAAACAAAAAACCGAA   1   |||----||*|*|||||||||||||||* targets:3780   UAGUAAUGUGGCGUUUGUUUUUUGGCUA   3807 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_787_Transcript_4/6_Confidence_0.529.Vivi mRNA sequence	NA	coding protein	psRNATarget
KA167789.1	ncRNA:24   AUCCAACACAAACAAAAAA-CCGAA   1   ***|*||||||||||||||-||||| targets:419   GCUGCUGUGUUUGUUUUUUAGGCUU   443 Target Full Sequence	3.0	TSA: Vitis vinifera Locus_7807_Transcript_1/2_Confidence_0.750.Vivi mRNA sequence	NA	coding protein	psRNATarget