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BaseInfo

ncRNA ID novel_osa_miR3423
Species Oryza sativa
Class miRNA
Genome position Chr2:1839539-1839714 [+]
Reference genome IRGSP-1.0
Source SRR2040389
Length 24
Mature sequence(if miRNA) 1 - AGUUUUUACUUGUAACGUUUGACC - 24
Stem-loop(if miRNA) --       A          U                     U      AUAAAUAUAAAAAACAAAUAG      UUAAAAUACUGUAGAUAAUAAA
  AGUUUUU CUUGUAACGU UGACCACUCGUCUUAUUCAAA UUUUUU                     UUGUGC                      G
  ||||||| |||||||||| ||||||||||||||||||||| ||||||                     ||||||
  UCAAAAA GAACGUUGCA ACUGGUGAGCAGAAUAAGUUU AAAAAA                     UUUGAU                      U
AC       C          U                     U      --------------------C      AAUUAUUAAAAUAAACACUGAA
Stem-loop sequence AGUUUUUACUUGUAACGUUUGACCACUCGUCUUAUUCAAAUUUUUUUAUAAAUAUAAAAAACAAAUAGUUGUGCUUAAAAUACUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUUAUUAAUAGUUUCAAAAAAUUUUGAAUAAGACGAGUGGUCAUACGUUGCAAGCAAAAACUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288319.1
ncRNA:24   CCAGUUUGCAAUGUUCAUUUUUGA   1
  |||||||||||=||||||||||||
targets:1854   GGUCAAACGUUGCAAGUAAAAACU   1877

1.5 Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence NA coding protein psRNATarget
AK289013.1
ncRNA:24   CCAGUUUGCAAUGUUCAUUUUUGA   1
  *||=||||*|||||||||||||||
targets:4002   AGUUAAACAUUACAAGUAAAAACU   4025

1.0 Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence NA coding protein psRNATarget