ncRNA ID | novel_osa_miR3423 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr2:1839539-1839714 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR2040389 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGUUUUUACUUGUAACGUUUGACC - 24 |
Stem-loop(if miRNA) |
--       A          U                     U      AUAAAUAUAAAAAACAAAUAG      UUAAAAUACUGUAGAUAAUAAA   AGUUUUU CUUGUAACGU UGACCACUCGUCUUAUUCAAA UUUUUU                     UUGUGC                      G   ||||||| |||||||||| ||||||||||||||||||||| ||||||                     ||||||   UCAAAAA GAACGUUGCA ACUGGUGAGCAGAAUAAGUUU AAAAAA                     UUUGAU                      U AC       C          U                     U      --------------------C      AAUUAUUAAAAUAAACACUGAA |
Stem-loop sequence | AGUUUUUACUUGUAACGUUUGACCACUCGUCUUAUUCAAAUUUUUUUAUAAAUAUAAAAAACAAAUAGUUGUGCUUAAAAUACUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUUAUUAAUAGUUUCAAAAAAUUUUGAAUAAGACGAGUGGUCAUACGUUGCAAGCAAAAACUCA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288319.1 |
|
1.5 | Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence | NA | coding protein | psRNATarget | |||||||||
AK289013.1 |
|
1.0 | Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence | NA | coding protein | psRNATarget |