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BaseInfo

ncRNA ID	novel_osa_miR3363
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:6719394-6719548 [-]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	21
Mature sequence(if miRNA)	1 - UUAAGGACCGUAGAAUUGCUU - 21
Stem-loop(if miRNA)	--                       AUACCAUGAA      UUUU     U    UAAA                    AUGU   GCAAUUUUACGGUCUUUGAGGAG          GUACCA    UUUUA UGUA    UUUGGUACCUCAUGAUACCU    A   |||||||||||||||||||||||          ||||||    ||||| ||||    ||||||||||||||||||||   CGUUAAGAUGCCAGGAAUUCCUC          CAUGGU    AAAAU ACAU    AAACCAUGGAGUACUAUGGA    C UU                       ----------      -UUU     C    UUAA                    GUAU
Stem-loop sequence	GCAAUUUUACGGUCUUUGAGGAGAUACCAUGAAGUACCAUUUUUUUUAUUGUAUAAAUUUGGUACCUCAUGAUACCUAUGUACUAUGAGGUAUCAUGAGGUACCAAAAAUUUACACUAAAAUUUUGGUACCUCCUUAAGGACCGUAGAAUUGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK105471.1	ncRNA:21   UUCGUUAAGAUGCCAGGAAUU   1   =|||||||||||||||||||| targets:1225   GAGCAAUUCUACGGUCCUUAA   1245 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-127-A01, full insert sequence	NA	coding protein	psRNATarget
XM_015765620.1	ncRNA:21   UUCGUUAAGAUGCCAGGAAUU   1   =|||||||||||||||||||| targets:1233   GAGCAAUUCUACGGUCCUUAA   1253 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X1, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
XM_015765621.1	ncRNA:21   UUCGUUAAGAUGCCAGGAAUU   1   =|||||||||||||||||||| targets:1251   GAGCAAUUCUACGGUCCUUAA   1271 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X3, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
AK072846.1	ncRNA:21   UUCGUUAAGAUGCCAGGAAUU   1   =|||||||||||||||||||| targets:1685   GAGCAAUUCUACGGUCCUUAA   1705 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:21   UUCGUUAAGAUGCCAGGAAUU   1   =|||||||||||||||||||| targets:2066   GAGCAAUUCUACGGUCCUUAA   2086 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:21   UUCGUUAAGAUGCCAGGAAUU   1   =|||||||||||||||||||| targets:2110   GAGCAAUUCUACGGUCCUUAA   2130 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015786027.1	ncRNA:21   UUCGUUAAGAUGCCAGGAAUU   1   |||||||||||||||||||=| targets:4597   AAGCAAUUCUACGGUCCUUGA   4617 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
XM_015789833.1	ncRNA:21   UUCGUUAAGAUGCCAGGAAUU   1   =||||||||||||||=||||| targets:3209   GAGCAAUUCUACGGUUCUUAA   3229 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group receptor-like protein 12 (LOC4324067), mRNA	receptor-like protein 12(LOC4324067)	coding protein	psRNATarget
AK120153.1	ncRNA:21   UUCGUUAAGAUGCCAGGAAUU   1   =||*||||=|||||||||||| targets:589   GAGAAAUUUUACGGUCCUUAA   609 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013029P18, full insert sequence	NA	coding protein	psRNATarget