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BaseInfo

ncRNA ID novel_gma_miR2540
Species Glycine max
Class miRNA
Genome position Chr17:21669670-21669753 [-]
Reference genome Glycine_max_v2.0
Source SRR1451658;SRR1451613
Length 21
Mature sequence(if miRNA) 1 - UUAAUGACCGUCUUAGAAAGU - 21
Stem-loop(if miRNA) --A            UG       A   C          UGU
   UUCUAAGAUGGU  UUAGCUA UGA UGUCUUAGAA   C
   ||||||||||||  ||||||| ||| ||||||||||
   AAGAUUCUGCCA  AAUUGAU GCU GCAGAAUCUU   C
UGA            GU       A   A          UCA
Stem-loop sequence AUUCUAAGAUGGUUGUUAGCUAAUGACUGUCUUAGAAUGUCCACUUUCUAAGACGAUCGAUAGUUAAUGACCGUCUUAGAAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014764114.1
ncRNA:21   UGAAAGAUUCUGCCAGUAAUU   1
  ||*|||||||||||||=||||
targets:2113   ACAUUCUAAGACGGUCGUUAA   2133

2.5 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X6, mRNA somatic embryogenesis receptor kinase 1-like(LOC100777573) coding protein psRNATarget
XM_014764113.1
ncRNA:21   UGAAAGAUUCUGCCAGUAAUU   1
  ||*|||||||||||||=||||
targets:2121   ACAUUCUAAGACGGUCGUUAA   2141

2.5 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X2, mRNA somatic embryogenesis receptor kinase 1-like(LOC100777573) coding protein psRNATarget
XM_006591004.2
ncRNA:21   UGAAAGAUUCUGCCAGUAAUU   1
  ||*|||||||||||||=||||
targets:2177   ACAUUCUAAGACGGUCGUUAA   2197

2.5 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X5, mRNA somatic embryogenesis receptor kinase 1-like(LOC100777573) coding protein psRNATarget
XM_014764112.1
ncRNA:21   UGAAAGAUUCUGCCAGUAAUU   1
  ||*|||||||||||||=||||
targets:2193   ACAUUCUAAGACGGUCGUUAA   2213

2.5 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X1, mRNA somatic embryogenesis receptor kinase 1-like(LOC100777573) coding protein psRNATarget
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