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BaseInfo

ncRNA ID novel_gma_miR2536
Species Glycine max
Class miRNA
Genome position Chr16:7276431-7276524 [-]
Reference genome Glycine_max_v2.0
Source SRR1451658
Length 25
Mature sequence(if miRNA) 1 - AAAAAAUAAGAGACUAAAAGUGAGC - 25
Stem-loop(if miRNA) --        C        AC                    A    U
  UUACUUUU GUCUUUUA  UUUUUUCAUUUUUAUUUUUA UUUU U
  |||||||| ||||||||  |||||||||||||||||||| ||||
  AGUGAAAA CAGAGAAU  AAAAAAGUAGAAAUGAAAAU AAGG A
CG        U        AA                    C    A
Stem-loop sequence UUACUUUUCGUCUUUUAACUUUUUUCAUUUUUAUUUUUAAUUUUUUAAGGAACUAAAAGUAAAGAUGAAAAAAAAUAAGAGACUAAAAGUGAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003527889.3
ncRNA:25   CGAGUGAAAAUCAGAGAAUAAAAAA   1
  |**=|=*|||=||||||||||||||
targets:1081   GAAUAUGUUUGGUCUCUUAUUUUUU   1105

2.0 PREDICTED: Glycine max TLC domain-containing protein 2-like (LOC100786028), mRNA TLC domain-containing protein 2-like(LOC100786028) coding protein psRNATarget
XM_014775382.1
ncRNA:25   CGAGUGAAAAUCAGAGAAUAAAAAA   1
  ||||==||||*||=|||||||||||
targets:1315   GCUCGUUUUUUGUUUCUUAUUUUUU   1339

2.5 PREDICTED: Glycine max uncharacterized LOC100814894 (LOC100814894), mRNA uncharacterized LOC100814894(LOC100814894) coding protein psRNATarget
XM_003536114.3
ncRNA:25   CGAGUGAAAAUCAGAGAAUAAAAAA   1
  ||*=|||*|||||||*|||||||||
targets:85   GCAUACUGUUAGUCUGUUAUUUUUU   109

2.5 PREDICTED: Glycine max aspartic proteinase-like protein 2 (LOC100804123), transcript variant X1, mRNA aspartic proteinase-like protein 2(LOC100804123) coding protein psRNATarget