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BaseInfo

ncRNA ID	novel_ath_miR1093
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr2:14445009-14445106 [+]
Reference genome	TAIR10
Source	SRR1312903
Length	22
Mature sequence(if miRNA)	77 - UGCCAAAGGAGAUUUGCCCGGU - 98
Stem-loop(if miRNA)	--A     A    A  A          U  -     -UU    CU         GGGCA GAUC CC UUGGCAGAGA CU AUUAC   CAUU  UGCAUC    ||||| |||| || |||||||||| || |||||   ||||  |||||A    CCCGU UUAG GG AACCGUCUCU GA UGGUG   GUAA  ACGUAU UGG     -    A  A          C  G     UUU    AU
Stem-loop sequence	AGGGCAAGAUCACCAUUGGCAGAGAUCUAUUACUUCAUUCUUGCAUCAUAUGCAUAAAUGUUUGUGGUGAGCUCUCUGCCAAAGGAGAUUUGCCCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY074292.1	ncRNA:22   UGGCCCGUUUAGAGGAAACCGU   1   ===||||||||||||||||||| targets:828   GUUGGGCAAAUCUCCUUUGGCA   849 Target Full Sequence	0.0	Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds	NA	coding protein	psRNATarget
NM_179887.3	ncRNA:22   UGGCCCGUUUAGAGGAAACCGU   1   ===||||||||||||||||||| targets:901   GUUGGGCAAAUCUCCUUUGGCA   922 Target Full Sequence	0.0	Arabidopsis thaliana phosphate 2 (PHO2), mRNA	phosphate 2(PHO2)	coding protein	psRNATarget
AY074292.1	ncRNA:22   UGGCCCGUUUAGAGGAAACCGU   1   *=||*||||||||||||||||| targets:885   UUCGAGCAAAUCUCCUUUGGCA   906 Target Full Sequence	1.0	Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds	NA	coding protein	psRNATarget
AY074292.1	ncRNA:22   UGGCCCGUUUAGAGGAAACCGU   1   *=*|||||*||||||||||||| targets:739   CUAGGGCAUAUCUCCUUUGGCA   760 Target Full Sequence	1.0	Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds	NA	coding protein	psRNATarget
NM_179887.3	ncRNA:22   UGGCCCGUUUAGAGGAAACCGU   1   *=||*||||||||||||||||| targets:958   UUCGAGCAAAUCUCCUUUGGCA   979 Target Full Sequence	1.0	Arabidopsis thaliana phosphate 2 (PHO2), mRNA	phosphate 2(PHO2)	coding protein	psRNATarget
NM_179887.3	ncRNA:22   UGGCCCGUUUAGAGGAAACCGU   1   *=*|||||*||||||||||||| targets:812   CUAGGGCAUAUCUCCUUUGGCA   833 Target Full Sequence	1.0	Arabidopsis thaliana phosphate 2 (PHO2), mRNA	phosphate 2(PHO2)	coding protein	psRNATarget
AY074292.1	ncRNA:22   UGGCCCGUUUAGAGGAAACCGU   1   *=*||||||||||=|||||||| targets:606   UUAGGGCAAAUCUUCUUUGGCA   627 Target Full Sequence	1.5	Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds	NA	coding protein	psRNATarget
NM_179887.3	ncRNA:22   UGGCCCGUUUAGAGGAAACCGU   1   *=*||||||||||=|||||||| targets:679   UUAGGGCAAAUCUUCUUUGGCA   700 Target Full Sequence	1.5	Arabidopsis thaliana phosphate 2 (PHO2), mRNA	phosphate 2(PHO2)	coding protein	psRNATarget