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BaseInfo

ncRNA ID	novel_ath_miR1091
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr2:19319868-19319954 [+]
Reference genome	TAIR10
Source	SRR1312902
Length	21
Mature sequence(if miRNA)	67 - AUGCACUGCCUCUUCCCUGGC - 87
Stem-loop(if miRNA)	--       CAA    A      AUU   UUUAC       UUAA   CAGGGAA   GCAG GCAUGG   GAG     UAAAACA    A   |||||||   |||| ||||||   |||     |||||||    C   GUCCCUU   CGUC CGUACC   CUC     GUUUUGU    G CG       CUC    A      CAU   ----U       CUCA
Stem-loop sequence	CAGGGAACAAGCAGAGCAUGGAUUGAGUUUACUAAAACAUUAAACGACUCUGUUUUGUCUCUACCCAUGCACUGCCUCUUCCCUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK228004.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUA   1   ||||||||||||||||||||| targets:1490   GCCAGGGAAGAGGCAGUGCAU   1510 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for putative peptide chain release factor, complete cds, clone: RAFL14-53-C21	NA	coding protein	psRNATarget
BX818937.1	ncRNA:21   CGGUCCCUUCUCCGUCACGUA   1   ||||||||||||||||||||| targets:1491   GCCAGGGAAGAGGCAGUGCAU   1511 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB29ZC05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_130270.4	ncRNA:21   CGGUCCCUUCUCCGUCACGUA   1   ||||||||||||||||||||| targets:1546   GCCAGGGAAGAGGCAGUGCAU   1566 Target Full Sequence	0.0	Arabidopsis thaliana Peptide chain release factor 1 mRNA	Peptide chain release factor 1(AT2G47020)	coding protein	psRNATarget
AF325063.1	ncRNA:21   CGGU-CCCUUCUCCGUCACGUA   1   ||||-||||||||||||||||| targets:4   GCCAAGGGAAGAGGCAGUGCAU   25 Target Full Sequence	2.0	Arabidopsis thaliana putative basic blue protein (plantacyanin) (At2g02850) mRNA, complete cds	NA	coding protein	psRNATarget
AY097407.1	ncRNA:21   CGGU-CCCUUCUCCGUCACGUA   1   ||||-||||||||||||||||| targets:4   GCCAAGGGAAGAGGCAGUGCAU   25 Target Full Sequence	2.0	Arabidopsis thaliana At2g02850/T17M13.2 mRNA, complete cds	NA	coding protein	psRNATarget
AY084407.1	ncRNA:21   CGGU-CCCUUCUCCGUCACGUA   1   ||||-||||||||||||||||| targets:70   GCCAAGGGAAGAGGCAGUGCAU   91 Target Full Sequence	2.0	Arabidopsis thaliana clone 10750 mRNA, complete sequence	NA	coding protein	psRNATarget
BX821204.1	ncRNA:21   CGGU-CCCUUCUCCGUCACGUA   1   ||||-||||||||||||||||| targets:6   GCCAAGGGAAGAGGCAGUGCAU   27 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL25ZA06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY064141.1	ncRNA:21   CGGU-CCCUUCUCCGUCACGUA   1   ||||-||||||||||||||||| targets:65   GCCAAGGGAAGAGGCAGUGCAU   86 Target Full Sequence	2.0	Arabidopsis thaliana At2g02850/T17M13.2 mRNA, complete cds	NA	coding protein	psRNATarget
NM_126340.3	ncRNA:21   CGGU-CCCUUCUCCGUCACGUA   1   ||||-||||||||||||||||| targets:278   GCCAAGGGAAGAGGCAGUGCAU   299 Target Full Sequence	2.0	Arabidopsis thaliana plantacyanin (ARPN), mRNA	plantacyanin(ARPN)	coding protein	psRNATarget