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BaseInfo

ncRNA ID novel_ath_miR1085
Species Arabidopsis thaliana
Class miRNA
Genome position Chr5:16660467-16660636 [-]
Reference genome TAIR10
Source SRR1312901
Length 21
Mature sequence(if miRNA) 1 - UUGGACUGAAGGGAGCUCCCU - 21
Stem-loop(if miRNA) --A     UU          CU       UAAUAU    -         -GA      AC        C  AA     A    AA   U
   GAGCU  CUUCGGUCCA  CAUGGAG      GUGA GAUUUAAUU   CUCUCG  UCAUUCAU CA  UACCA AUGA  GAA U
   |||||  ||||||||||  |||||||      |||| |||||||||   ||||||  |||||||| ||  ||||| ||||  |||
   CUCGA  GAAGUCAGGU  GUAUCUC      CACU CUGAGUUAA   GAGAGC  AGUAAGUA GU  AUGGU UACU  CUU U
UCC     GG          UC       ----UU    U         ACA      GU        A  AA     A    --   G
Stem-loop sequence AGAGCUUUCUUCGGUCCACUCAUGGAGUAAUAUGUGAGAUUUAAUUGACUCUCGACUCAUUCAUCCAAAUACCAAAUGAAAGAAUUUGUUCUCAUAUGGUAAAUGAAUGAAUGAUGCGAGAGACAAAUUGAGUCUUCACUUCUCUAUGCUUGGACUGAAGGGAGCUCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_128252.6
ncRNA:21   UCCCUCGAGGGAAGUCAGGUU   1
  **|||||||||||||*|||||
targets:826   UUGGAGCUCCCUUCAUUCCAA   846

1.5 Arabidopsis thaliana myb domain protein 104 (MYB104), partial mRNA myb domain protein 104(MYB104) coding protein psRNATarget