ncRNA ID | novel_ath_miR1085 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | Chr5:16660467-16660636 [-] |
Reference genome | TAIR10 |
Source | SRR1312901 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UUGGACUGAAGGGAGCUCCCU - 21 |
Stem-loop(if miRNA) |
--A     UU          CU       UAAUAU    -         -GA      AC        C  AA     A    AA   U    GAGCU  CUUCGGUCCA  CAUGGAG      GUGA GAUUUAAUU   CUCUCG  UCAUUCAU CA  UACCA AUGA  GAA U    |||||  ||||||||||  |||||||      |||| |||||||||   ||||||  |||||||| ||  ||||| ||||  |||    CUCGA  GAAGUCAGGU  GUAUCUC      CACU CUGAGUUAA   GAGAGC  AGUAAGUA GU  AUGGU UACU  CUU U UCC     GG          UC       ----UU    U         ACA      GU        A  AA     A    --   G |
Stem-loop sequence | AGAGCUUUCUUCGGUCCACUCAUGGAGUAAUAUGUGAGAUUUAAUUGACUCUCGACUCAUUCAUCCAAAUACCAAAUGAAAGAAUUUGUUCUCAUAUGGUAAAUGAAUGAAUGAUGCGAGAGACAAAUUGAGUCUUCACUUCUCUAUGCUUGGACUGAAGGGAGCUCCCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_128252.6 |
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1.5 | Arabidopsis thaliana myb domain protein 104 (MYB104), partial mRNA | myb domain protein 104(MYB104) | coding protein | psRNATarget |