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BaseInfo

ncRNA ID	novel_ath_miR1078
Species	Arabidopsis thaliana
Class	miRNA
Genome position	Chr1:27066864-27066913 [-]
Reference genome	TAIR10
Source	SRR1312898
Length	24
Mature sequence(if miRNA)	27 - UUUCCGAGUGACUGAGAAUUGGCG - 50
Stem-loop(if miRNA)	-UUUC  AG     -GA       C      CG  UGACU   GAAUUGG G      ||  |||||   |||||||      GC  AUUGG   UUUAACC U UUAAA  CU     GGA       A
Stem-loop sequence	UUUCCGAGUGACUGAGAAUUGGCGUACCAAUUUAGGGGUUAUCCGAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001343104.1	ncRNA:24   GCGGUUAAGAGUCAGUGAGCCUUU   1   |||||||||||||||||||*|||* targets:515   CGCCAAUUCUCAGUCACUCAGAAU   538 Target Full Sequence	2.5	Arabidopsis thaliana histidinol phosphate aminotransferase 1 (HPA1), mRNA	histidinol phosphate aminotransferase 1(HPA1)	coding protein	psRNATarget
NM_001343106.1	ncRNA:24   GCGGUUAAGAGUCAGUGAGCCUUU   1   |||||||||||||||||||*|||* targets:515   CGCCAAUUCUCAGUCACUCAGAAU   538 Target Full Sequence	2.5	Arabidopsis thaliana histidinol phosphate aminotransferase 1 (HPA1), mRNA	histidinol phosphate aminotransferase 1(HPA1)	coding protein	psRNATarget
NM_001343105.1	ncRNA:24   GCGGUUAAGAGUCAGUGAGCCUUU   1   |||||||||||||||||||*|||* targets:515   CGCCAAUUCUCAGUCACUCAGAAU   538 Target Full Sequence	2.5	Arabidopsis thaliana histidinol phosphate aminotransferase 1 (HPA1), mRNA	histidinol phosphate aminotransferase 1(HPA1)	coding protein	psRNATarget
NM_121071.4	ncRNA:24   GCGGUUAAGAGUCAGUGAGCCUUU   1   |||||||||||||||||||*|||* targets:831   CGCCAAUUCUCAGUCACUCAGAAU   854 Target Full Sequence	2.5	Arabidopsis thaliana histidinol phosphate aminotransferase 1 (HPA1), mRNA	histidinol phosphate aminotransferase 1(HPA1)	coding protein	psRNATarget