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BaseInfo

ncRNA ID novel_ath_miR1070
Species Arabidopsis thaliana
Class miRNA
Genome position Chr1:6237220-6237298 [-]
Reference genome TAIR10
Source ERR1297321
Length 21
Mature sequence(if miRNA) 59 - AAAAGAUUUACAAUGGAUUUU - 79
Stem-loop(if miRNA) --       U     U  A           C   UUGUA
  AAAAGAU UACAA GG UUUUAAAGGAU UUC     A
  ||||||| ||||| || ||||||||||| |||     A
  UUUUCUA AUGUU CC AAAAUUUUCUA AAG     U
AA       C     C  A           A   UUUCU
Stem-loop sequence AAAAGAUUUACAAUGGAUUUUAAAGGAUCUUCUUGUAAAUUCUUUGAAAAUCUUUUAAAAACCCUUGUACAUCUUUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001335514.1
ncRNA:21   UUUUAGGUAACAUUUAGAAAA   1
  =|||||=|||*||||||||||
targets:1592   GAAAUCUAUUUUAAAUCUUUU   1612

2.5 Arabidopsis thaliana Major facilitator superfamily protein (MEE15), mRNA Major facilitator superfamily protein(MEE15) coding protein psRNATarget
NM_001335509.1
ncRNA:21   UUUUAGGUAACAUUUAGAAAA   1
  =|||||=|||*||||||||||
targets:1490   GAAAUCUAUUUUAAAUCUUUU   1510

2.5 Arabidopsis thaliana Major facilitator superfamily protein (MEE15), mRNA Major facilitator superfamily protein(MEE15) coding protein psRNATarget
NM_001335510.1
ncRNA:21   UUUUAGGUAACAUUUAGAAAA   1
  =|||||=|||*||||||||||
targets:1419   GAAAUCUAUUUUAAAUCUUUU   1439

2.5 Arabidopsis thaliana Major facilitator superfamily protein (MEE15), mRNA Major facilitator superfamily protein(MEE15) coding protein psRNATarget
NM_001335508.1
ncRNA:21   UUUUAGGUAACAUUUAGAAAA   1
  =|||||=|||*||||||||||
targets:1424   GAAAUCUAUUUUAAAUCUUUU   1444

2.5 Arabidopsis thaliana Major facilitator superfamily protein (MEE15), mRNA Major facilitator superfamily protein(MEE15) coding protein psRNATarget
NM_001335512.1
ncRNA:21   UUUUAGGUAACAUUUAGAAAA   1
  =|||||=|||*||||||||||
targets:1169   GAAAUCUAUUUUAAAUCUUUU   1189

2.5 Arabidopsis thaliana Major facilitator superfamily protein (MEE15), mRNA Major facilitator superfamily protein(MEE15) coding protein psRNATarget