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BaseInfo

ncRNA ID novel_ath_miR1059
Species Arabidopsis thaliana
Class miRNA
Genome position Chr4:3554455-3554544 [+]
Reference genome TAIR10
Source SRR1266871
Length 24
Mature sequence(if miRNA) 67 - CUUGGUAGAAAGUGUUAGGUUUGU - 90
Stem-loop(if miRNA) --        -       U      C UAU   ACUU     UGU  G
  AAACCUAA ACUUUCU UCAAGC C   AUC    GUGAG   CU U
  |||||||| ||||||| |||||| |   |||    |||||   ||
  UUUGGAUU UGAAAGA GGUUCG G   UAG    UAUUC   GG G
UG        G       U      A --U   -CUU     --U  A
Stem-loop sequence AAACCUAAACUUUCUUUCAAGCCCUAUAUCACUUGUGAGUGUCUGUGAGGUCUUAUUUCGAUUGAGCUUGGUAGAAAGUGUUAGGUUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EF183005.1
ncRNA:24   UGUUUGGAUUGUGAAAGAUGGUUC   1
  ||=|||||||||||||||||||||
targets:3171   ACGAACCUAACACUUUCUACCAAG   3194

0.0 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
AK230139.1
ncRNA:24   UGUUUGGAUUGUGAAAGAUGGUUC   1
  ||=|||||||||||||||||||||
targets:545   ACGAACCUAACACUUUCUACCAAG   568

0.0 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL22-82-O04 NA coding protein psRNATarget